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eF-site ID
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6a5p-B |
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PDB Code
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6a5p |
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Chain
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B |
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click to enlarge
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Title
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RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome |
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Classification
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TRANSCRIPTION/RNA/DNA |
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Compound
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DNA-directed RNA polymerase subunit |
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Source
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ORGANISM_COMMON: Yeast; ORGANISM_SCIENTIFIC: Komagataella phaffii (strain GS115 / ATCC 20864); |
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Sequence
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B: |
DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQD
LVWEEPRLILDQPAQHTNEKDNINKRYEIRFGKIYLSRPT
MTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSID
GNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGG
YFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIR
SALEKGSRLISTMQIKLYGREDKGTGRTIKATLPYVKQDI
PIVIVFRALGVVPDGEILQHICYDENDWQMLEMLKPCIEE
GFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKE
LLPHITQEEGFETRKTFFLGYMVNRLLLCALERKDQDDRD
HFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETD
RDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGV
SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHW
GLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIINFLE
EWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVST
MRDLRRSGAISPEVSIIRDIREREFKIFTDVGRVYRPLFI
VEDDESKDNKGELRITKEHIRKIQQGYDDDVYGWSSLVTS
GVIEYVDGEEEETIMIAMTPEDLQTRSLNDTAKRIKPEMS
TSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS
AMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEY
LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF
RSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYE
KLDEDGLIAPGVRVSGDDIIIGKTTPIPPYHTKRDASTPL
RSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFA
SRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRM
TVAHLIECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRD
NGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDD
KIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAH
GAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFE
CRSCKNKTNIYQLHIPYAAKLLFQELMAMNIAPRLYTERS
G
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Description
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Functional site
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1)
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chain |
B |
| residue |
1163 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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2)
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chain |
B |
| residue |
1166 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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3)
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chain |
B |
| residue |
1182 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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4)
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chain |
B |
| residue |
1185 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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5)
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chain |
B |
| residue |
977-989 |
| type |
prosite |
| sequence |
GDKFASRHGQKGT
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
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| source |
prosite : PS01166
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