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eF-site ID
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5zx2-C |
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PDB Code
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5zx2 |
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Chain
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C |
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click to enlarge
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Title
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Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor sigma H and 7nt RNA |
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Classification
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TRANSCRIPTION/DNA/RNA |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(5ZX2) |
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Sequence
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C: |
SNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGS
PRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSF
SDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI
KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYF
DETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRID
RKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNT
VGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYD
LARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVR
LHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQN
QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI
KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRER
AGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN
PFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSP
IDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMV
SVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG
TGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTR
RTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPC
TDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL
TSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDER
GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGE
KAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNE
LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL
ADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVD
AAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQG
LLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGY
MYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQR
FGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV
KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEL
REGEDEDLERAAANLGI
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Description
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Functional site
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1)
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chain |
C |
| residue |
882-894 |
| type |
prosite |
| sequence |
GDKLAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKLAGrHGNKGV
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| source |
prosite : PS01166
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