eF-site ID 5zrf-CDEF
PDB Code 5zrf
Chain C, D, E, F

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Title Crystal structure of human topoisomerase II beta in complex with 5-iodouridine-containing-DNA and etoposide in space group p21
Classification ISOMERASE/DNA
Compound DNA topoisomerase 2-beta
Source (5ZRF)
Sequence C:  AGCCGAGC
D:  XGCAGCXCGGCX
E:  AGCCGAGC
F:  XGCAGCXCGGCX
Description


Functional site

1) chain D
residue 12
type
sequence A
description binding site for residue EVP D 101
source : AC5

2) chain D
residue 13
type
sequence G
description binding site for residue EVP D 101
source : AC5

3) chain E
residue 8
type
sequence C
description binding site for residue EVP D 101
source : AC5

4) chain F
residue 9
type
sequence X
description binding site for residue EVP D 101
source : AC5

5) chain F
residue 10
type
sequence G
description binding site for residue EVP D 101
source : AC5

6) chain C
residue 8
type
sequence C
description binding site for residue EVP F 1301
source : AC7

7) chain D
residue 9
type
sequence X
description binding site for residue EVP F 1301
source : AC7

8) chain D
residue 10
type
sequence G
description binding site for residue EVP F 1301
source : AC7

9) chain F
residue 12
type
sequence A
description binding site for residue EVP F 1301
source : AC7

10) chain F
residue 13
type
sequence G
description binding site for residue EVP F 1301
source : AC7

11) chain D
residue 11
type
sequence C
description binding site for Di-nucleotide IU D 9 and DG D 10
source : AC9

12) chain F
residue 10
type
sequence G
description binding site for Di-nucleotide IU D 9 and DG D 10
source : AC9

13) chain F
residue 11
type
sequence C
description binding site for Di-nucleotide IU D 9 and DG D 10
source : AC9

14) chain F
residue 12
type
sequence A
description binding site for Di-nucleotide IU D 9 and DG D 10
source : AC9

15) chain D
residue 13
type
sequence G
description binding site for Di-nucleotide DC D 14 and IU D 15
source : AD1

16) chain D
residue 16
type
sequence C
description binding site for Di-nucleotide DC D 14 and IU D 15
source : AD1

17) chain E
residue 5
type
sequence G
description binding site for Di-nucleotide DC D 14 and IU D 15
source : AD1

18) chain E
residue 6
type
sequence A
description binding site for Di-nucleotide DC D 14 and IU D 15
source : AD1

19) chain E
residue 7
type
sequence G
description binding site for Di-nucleotide DC D 14 and IU D 15
source : AD1

20) chain D
residue 14
type
sequence C
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

21) chain D
residue 17
type
sequence G
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

22) chain E
residue 4
type
sequence C
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

23) chain E
residue 5
type
sequence G
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

24) chain E
residue 6
type
sequence A
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

25) chain E
residue 7
type
sequence G
description binding site for Di-nucleotide IU D 15 and DC D 16
source : AD2

26) chain D
residue 18
type
sequence G
description binding site for Di-nucleotide DC D 19 and IU D 20
source : AD3

27) chain E
residue 1
type
sequence A
description binding site for Di-nucleotide DC D 19 and IU D 20
source : AD3

28) chain E
residue 2
type
sequence G
description binding site for Di-nucleotide DC D 19 and IU D 20
source : AD3

29) chain D
residue 10
type
sequence G
description binding site for Di-nucleotide IU F 9 and DG F 10
source : AD4

30) chain D
residue 11
type
sequence C
description binding site for Di-nucleotide IU F 9 and DG F 10
source : AD4

31) chain D
residue 12
type
sequence A
description binding site for Di-nucleotide IU F 9 and DG F 10
source : AD4

32) chain F
residue 11
type
sequence C
description binding site for Di-nucleotide IU F 9 and DG F 10
source : AD4

33) chain C
residue 5
type
sequence G
description binding site for Di-nucleotide DC F 14 and IU F 15
source : AD5

34) chain C
residue 6
type
sequence A
description binding site for Di-nucleotide DC F 14 and IU F 15
source : AD5

35) chain C
residue 7
type
sequence G
description binding site for Di-nucleotide DC F 14 and IU F 15
source : AD5

36) chain F
residue 13
type
sequence G
description binding site for Di-nucleotide DC F 14 and IU F 15
source : AD5

37) chain F
residue 16
type
sequence C
description binding site for Di-nucleotide DC F 14 and IU F 15
source : AD5

38) chain C
residue 5
type
sequence G
description binding site for Di-nucleotide IU F 15 and DC F 16
source : AD6

39) chain C
residue 6
type
sequence A
description binding site for Di-nucleotide IU F 15 and DC F 16
source : AD6

40) chain C
residue 7
type
sequence G
description binding site for Di-nucleotide IU F 15 and DC F 16
source : AD6

41) chain F
residue 14
type
sequence C
description binding site for Di-nucleotide IU F 15 and DC F 16
source : AD6

42) chain F
residue 17
type
sequence G
description binding site for Di-nucleotide IU F 15 and DC F 16
source : AD6

43) chain C
residue 1
type
sequence A
description binding site for Di-nucleotide DC F 19 and IU F 20
source : AD7

44) chain C
residue 2
type
sequence G
description binding site for Di-nucleotide DC F 19 and IU F 20
source : AD7

45) chain F
residue 18
type
sequence G
description binding site for Di-nucleotide DC F 19 and IU F 20
source : AD7


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