eF-site ID 5yr6-A
PDB Code 5yr6
Chain A

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Title Human methionine aminopeptidase type 1b (F309L mutant) in complex with TNP470
Classification HYDROLASE
Compound Methionine aminopeptidase 1
Source (MAP11_HUMAN)
Sequence A:  YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQ
ALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPG
VTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV
ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGE
VDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA
QANGFSVVRSYCGHGIHKLLHTAPNVPHYAKNKAVGVMKS
GHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHT
LLVTDTGCEILTRRLDSARPHFMS
Description


Functional site

1) chain A
residue 240
type
sequence D
description binding site for residue CO A 401
source : AC1

2) chain A
residue 303
type
sequence H
description binding site for residue CO A 401
source : AC1

3) chain A
residue 334
type
sequence T
description binding site for residue CO A 401
source : AC1

4) chain A
residue 336
type
sequence E
description binding site for residue CO A 401
source : AC1

5) chain A
residue 367
type
sequence E
description binding site for residue CO A 401
source : AC1

6) chain A
residue 229
type
sequence D
description binding site for residue CO A 402
source : AC2

7) chain A
residue 240
type
sequence D
description binding site for residue CO A 402
source : AC2

8) chain A
residue 367
type
sequence E
description binding site for residue CO A 402
source : AC2

9) chain A
residue 207
type
sequence N
description binding site for residue NA A 403
source : AC3

10) chain A
residue 209
type
sequence V
description binding site for residue NA A 403
source : AC3

11) chain A
residue 363
type
sequence S
description binding site for residue NA A 403
source : AC3

12) chain A
residue 192
type
sequence P
description binding site for residue TN4 A 410
source : AC4

13) chain A
residue 195
type
sequence Y
description binding site for residue TN4 A 410
source : AC4

14) chain A
residue 212
type
sequence H
description binding site for residue TN4 A 410
source : AC4

15) chain A
residue 300
type
sequence Y
description binding site for residue TN4 A 410
source : AC4

16) chain A
residue 301
type
sequence C
description binding site for residue TN4 A 410
source : AC4

17) chain A
residue 310
type
sequence H
description binding site for residue TN4 A 410
source : AC4

18) chain A
residue 336
type
sequence E
description binding site for residue TN4 A 410
source : AC4

19) chain A
residue 353
type
sequence W
description binding site for residue TN4 A 410
source : AC4

20) chain A
residue 300-318
type prosite
sequence YCGHGIHKLLHTAPNVPHY
description MAP_1 Methionine aminopeptidase subfamily 1 signature. YcGHGIHkllHtapnVp.HY
source prosite : PS00680

21) chain A
residue 310
type BINDING
sequence H
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 212
type BINDING
sequence H
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 336
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16274222, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI2

24) chain A
residue 367
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16274222, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI2

25) chain A
residue 229
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16274222, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI2

26) chain A
residue 240
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16274222, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI2

27) chain A
residue 303
type BINDING
sequence H
description BINDING => ECO:0000255|HAMAP-Rule:MF_03174, ECO:0000269|PubMed:16274222, ECO:0000269|PubMed:16724298, ECO:0000269|PubMed:16823043, ECO:0000269|PubMed:17114291
source Swiss-Prot : SWS_FT_FI2


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