eF-site ID 5yq7-M
PDB Code 5yq7
Chain M

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Title Cryo-EM structure of the RC-LH core complex from Roseiflexus castenholzii
Classification PHOTOSYNTHESIS
Compound Beta subunit of light-harvesting 1
Source ORGANISM_SCIENTIFIC: Roseiflexus castenholzii;
Sequence M:  IDLHDEEYRDGLEGTIAKPPGHVGWMQRLLGEGQVGPIYV
GLWGVISFITFFASAFIILVDYGRQVGWNPIIYLREFWNL
AVYPPPTEYGLSWNVPWDKGGAWLAATFFLHISVLTWWAR
LYTRAKATGVGTQLAWGFASALSLYFVIYLFHPLALGNWS
AAPGHGFRAILDWTNYVSIHWGNFYYNPFHMLSIFFLLGS
TLLLAMHGATIVATSKWKSEMEFTEMMAEGPGTQRAQLFW
RWVMGWNANSYNIHIWAWWFAAFTAITGAIGLFLSGTLVP
DWYAWGETAKIVAPWPNPDWAQYVF
Description (1)  Beta subunit of light-harvesting 1, Precursor for L subunits of photosynthetic reaction center, Cytochrome subunit of photosynthetic reaction center, Alpha subunit of light-harvesting 1, Peptide from Precursor for L and M subunits of photosynthetic reaction center, Precursor for M subunits of photosynthetic reaction center


Functional site

1) chain M
residue 526
type
sequence M
description binding site for residue BCL L 1001
source : AC7

2) chain M
residue 529
type
sequence I
description binding site for residue BCL L 1001
source : AC7

3) chain M
residue 530
type
sequence F
description binding site for residue BCL L 1001
source : AC7

4) chain M
residue 533
type
sequence L
description binding site for residue BCL L 1001
source : AC7

5) chain M
residue 534
type
sequence G
description binding site for residue BCL L 1001
source : AC7

6) chain M
residue 533
type
sequence L
description binding site for residue BPH L 1003
source : AC9

7) chain M
residue 536
type
sequence T
description binding site for residue BPH L 1003
source : AC9

8) chain M
residue 537
type
sequence L
description binding site for residue BPH L 1003
source : AC9

9) chain M
residue 541
type
sequence M
description binding site for residue BPH L 1003
source : AC9

10) chain M
residue 575
type
sequence W
description binding site for residue BPH L 1003
source : AC9

11) chain M
residue 542
type
sequence H
description binding site for residue FE L 1005
source : AD2

12) chain M
residue 557
type
sequence E
description binding site for residue FE L 1005
source : AD2

13) chain M
residue 589
type
sequence H
description binding site for residue FE L 1005
source : AD2

14) chain M
residue 514
type
sequence I
description binding site for residue HEM C 503
source : AE4

15) chain M
residue 541
type
sequence M
description binding site for residue MQE M 701
source : AI3

16) chain M
residue 542
type
sequence H
description binding site for residue MQE M 701
source : AI3

17) chain M
residue 545
type
sequence T
description binding site for residue MQE M 701
source : AI3

18) chain M
residue 575
type
sequence W
description binding site for residue MQE M 701
source : AI3

19) chain M
residue 581
type
sequence W
description binding site for residue MQE M 701
source : AI3

20) chain M
residue 583
type
sequence A
description binding site for residue MQE M 701
source : AI3

21) chain M
residue 584
type
sequence N
description binding site for residue MQE M 701
source : AI3

22) chain M
residue 588
type
sequence I
description binding site for residue MQE M 701
source : AI3

23) chain M
residue 386
type
sequence F
description binding site for residue BCL M 702
source : AI4

24) chain M
residue 479
type
sequence L
description binding site for residue BCL M 702
source : AI4

25) chain M
residue 513
type
sequence S
description binding site for residue BCL M 702
source : AI4

26) chain M
residue 520
type
sequence Y
description binding site for residue BCL M 702
source : AI4

27) chain M
residue 525
type
sequence H
description binding site for residue BCL M 702
source : AI4

28) chain M
residue 528
type
sequence S
description binding site for residue BCL M 702
source : AI4

29) chain M
residue 532
type
sequence L
description binding site for residue BCL M 702
source : AI4

30) chain M
residue 603
type
sequence G
description binding site for residue BCL M 702
source : AI4

31) chain M
residue 607
type
sequence L
description binding site for residue BCL M 702
source : AI4

32) chain M
residue 484
type
sequence Y
description binding site for residue BPH M 703
source : AI5

33) chain M
residue 502
type
sequence F
description binding site for residue BPH M 703
source : AI5

34) chain M
residue 503
type
sequence R
description binding site for residue BPH M 703
source : AI5

35) chain M
residue 505
type
sequence I
description binding site for residue BPH M 703
source : AI5

36) chain M
residue 506
type
sequence L
description binding site for residue BPH M 703
source : AI5

37) chain M
residue 386
type
sequence F
description binding site for residue BPH M 704
source : AI6

38) chain M
residue 452
type
sequence W
description binding site for residue BPH M 704
source : AI6

39) chain M
residue 473
type
sequence F
description binding site for residue BPH M 704
source : AI6

40) chain M
residue 476
type
sequence A
description binding site for residue BPH M 704
source : AI6

41) chain M
residue 518-544
type prosite
sequence NFYYNPFHMLSIFFLLGSTLLLAMHGA
description REACTION_CENTER Photosynthetic reaction center proteins signature. NfyynPfHmlSiffllgstlllAmHGA
source prosite : PS00244


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