eF-site ID 5y87-ABCD
PDB Code 5y87
Chain A, B, C, D

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Title Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
Classification RNA
Compound RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3')
Source (5Y87)
Sequence A:  ACCCGCAAGGCCGACGGC
B:  GCCGCCGCUGGUGCAAGUCCAGCCACGCUUCGGCGUGGGC
GCUCAUGGGU
C:  ACCCGCAAGGCCGACGGC
D:  GCCGCCGCUGGUGCAAGUCCAGCCACGCUUCGGCGUGGGC
GCUCAUGGGU
Description


Functional site

1) chain A
residue 9
type
sequence G
description binding site for residue MN A 101
source : AC1

2) chain B
residue 42
type
sequence C
description binding site for residue MN B 102
source : AC3

3) chain B
residue 43
type
sequence U
description binding site for residue MN B 102
source : AC3

4) chain B
residue 43
type
sequence U
description binding site for residue MN B 103
source : AC4

5) chain B
residue 44
type
sequence C
description binding site for residue MN B 103
source : AC4

6) chain B
residue 47
type
sequence G
description binding site for residue MN B 104
source : AC5

7) chain B
residue 14
type
sequence C
description binding site for residue MN B 105
source : AC6

8) chain B
residue 45
type
sequence A
description binding site for residue MN B 105
source : AC6

9) chain B
residue 41
type
sequence G
description binding site for residue MN B 106
source : AC7

10) chain B
residue 7
type
sequence G
description binding site for residue MN B 107
source : AC8

11) chain B
residue 38
type
sequence G
description binding site for residue MN B 107
source : AC8

12) chain B
residue 17
type
sequence G
description binding site for residue MN B 108
source : AC9

13) chain B
residue 4
type
sequence G
description binding site for residue MN B 111
source : AD3

14) chain D
residue 14
type
sequence C
description binding site for residue MN B 111
source : AD3

15) chain C
residue 9
type
sequence G
description binding site for residue MN C 101
source : AD4

16) chain D
residue 7
type
sequence G
description binding site for residue MN D 102
source : AD6

17) chain D
residue 38
type
sequence G
description binding site for residue MN D 102
source : AD6

18) chain D
residue 41
type
sequence G
description binding site for residue MN D 103
source : AD7

19) chain D
residue 42
type
sequence C
description binding site for residue MN D 105
source : AD9

20) chain D
residue 43
type
sequence U
description binding site for residue MN D 105
source : AD9

21) chain D
residue 43
type
sequence U
description binding site for residue MN D 106
source : AE1

22) chain D
residue 44
type
sequence C
description binding site for residue MN D 106
source : AE1

23) chain D
residue 47
type
sequence G
description binding site for residue MN D 107
source : AE2

24) chain D
residue 17
type
sequence G
description binding site for residue MN D 108
source : AE3


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