eF-site ID 5xs7-ABCHL
PDB Code 5xs7
Chain A, B, C, H, L

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Title Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Classification VIRUS
Compound Light chain of Fab 1D5
Source ORGANISM_SCIENTIFIC: Mus musculus;
Sequence A:  VNEASVEHFYSRAGLVGVVEVKDSGTSLDGYTVWPIDVMG
FVQQRRKLELSTYMRFDAEFTFVSNLSNSTTPGMLLQYMY
VPPGAPKPDGRKSYQWQTATNPSVFAKLSDPPPQVSVPFM
SPATAYQWFYDGYPTNLQYGQCPNNMMGHFAIRTVSESTT
GKNVHVRVYMRIKHVRAWVPRPLRSQAYMVKNYPTYSQTI
TNTATDRASITTTD
B:  NIVLSYGEWPEYCPKPTRPDVSVNRFYTLSTKSWKTESTG
WYWKFPDVLNDTGVFGQNAQFHYLYRSGFCMHVQCNASKF
HQGALLVAAIPEFVIAASSPLYPDFAHTNPGKDGQEFRDP
YVLDAGIPLSQALVFPHQWINLRTNNCATIIMPYVNALPF
DSALNHSNFGLVVIPISPLKYCNGATTEVPVTLTIAPLNS
EFSGL
C:  PTELKPGTNQFLTTDDGTSPPILPGFEPTPLIHIPGEFTS
LLDLCQIETILEVNNTTGTIGVSRLLIPVRAQNNVDQLCA
SFQVDPGRNGPWQSTMVGQICRYYTQWSGSLKVTFMFTGS
FMATGKMLIAYTPPGSAQPATREAAMLGTHIVWDFGLQSS
VTLVIPWISNTGIVTIWYQTNFVVPPDTPTEANIIALGAA
QKNFTLKLCKDTDEI
H:  EVQLVESGGGLVKPGGSLKLSCAASGFAFSTYDMSWVRQT
PEKRLELVAHISSGGGYIYYPDTVKGRFTISRDNAKNTLY
LQMSSLKSEDTAMYYCTRQKGLYYGFDYWGQGTTLTVSS
L:  DIVMTQSHKFMSTSVGDRVSITCKASQDVNTAVAWYQQRP
GQSPKLLIYSASYRYTGVPDRFTGSGSGTDFTFTISSVQA
EDLAVYYCQQHYTTPHTFGGGTKLEIKR
Description (1)  Light chain of Fab 1D5, Heavy chain of Fab 1D5, Genome polyprotein


Functional site

1) chain C
residue 55-66
type prosite
sequence VNNTTGTIGVSR
description AMP_BINDING Putative AMP-binding domain signature. VNNTTGTIGvSR
source prosite : PS00455


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