eF-site ID 5xag-A
PDB Code 5xag
Chain A

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Title Crystal structure of tubulin-stathmin-TTL-Compound Z2 complex
Classification STRUCTURAL PROTEIN
Compound Tubulin alpha-1B chain
Source Gallus gallus (Chicken) (E1BQ43_CHICK)
Sequence A:  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK
TIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT
GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD
YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR
GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS
Description (1)  Tubulin alpha-1B chain, Tubulin beta-2B chain, Stathmin-4, Uncharacterized protein


Functional site

1) chain A
residue 10
type
ligand
sequence G
description binding site for residue GTP A 501
source : AC1

2) chain A
residue 11
type
ligand
sequence Q
description binding site for residue GTP A 501
source : AC1

3) chain A
residue 12
type
ligand
sequence A
description binding site for residue GTP A 501
source : AC1

4) chain A
residue 15
type
ligand
sequence Q
description binding site for residue GTP A 501
source : AC1

5) chain A
residue 98
type
ligand
sequence D
description binding site for residue GTP A 501
source : AC1

6) chain A
residue 99
type
ligand
sequence A
description binding site for residue GTP A 501
source : AC1

7) chain A
residue 101
type
ligand
sequence N
description binding site for residue GTP A 501
source : AC1

8) chain A
residue 140
type
ligand
sequence S
description binding site for residue GTP A 501
source : AC1

9) chain A
residue 143
type
ligand
sequence G
description binding site for residue GTP A 501
source : AC1

10) chain A
residue 144
type
ligand
sequence G
description binding site for residue GTP A 501
source : AC1

11) chain A
residue 145
type
ligand
sequence T
description binding site for residue GTP A 501
source : AC1

12) chain A
residue 146
type
ligand
sequence G
description binding site for residue GTP A 501
source : AC1

13) chain A
residue 177
type
ligand
sequence V
description binding site for residue GTP A 501
source : AC1

14) chain A
residue 179
type
ligand
sequence T
description binding site for residue GTP A 501
source : AC1

15) chain A
residue 183
type
ligand
sequence E
description binding site for residue GTP A 501
source : AC1

16) chain A
residue 206
type
ligand
sequence N
description binding site for residue GTP A 501
source : AC1

17) chain A
residue 224
type
ligand
sequence Y
description binding site for residue GTP A 501
source : AC1

18) chain A
residue 228
type
ligand
sequence N
description binding site for residue GTP A 501
source : AC1

19) chain A
residue 231
type
ligand
sequence I
description binding site for residue GTP A 501
source : AC1

20) chain A
residue 11
type
ligand
sequence Q
description binding site for residue MG A 502
source : AC2

21) chain A
residue 69
type
ligand
sequence D
description binding site for residue MG A 502
source : AC2

22) chain A
residue 71
type
ligand
sequence E
description binding site for residue MG A 502
source : AC2

23) chain A
residue 216
type
ligand
sequence N
description binding site for residue GOL A 503
source : AC3

24) chain A
residue 274
type
ligand
sequence P
description binding site for residue GOL A 503
source : AC3

25) chain A
residue 275
type
ligand
sequence V
description binding site for residue GOL A 503
source : AC3

26) chain A
residue 300
type
ligand
sequence N
description binding site for residue GOL A 503
source : AC3

27) chain A
residue 309
type
ligand
sequence H
description binding site for residue GOL A 504
source : AC4

28) chain A
residue 310
type
ligand
sequence G
description binding site for residue GOL A 504
source : AC4

29) chain A
residue 382
type
ligand
sequence T
description binding site for residue GOL A 504
source : AC4

30) chain A
residue 383
type
ligand
sequence A
description binding site for residue GOL A 504
source : AC4

31) chain A
residue 386
type
ligand
sequence E
description binding site for residue GOL A 504
source : AC4

32) chain A
residue 433
type
ligand
sequence E
description binding site for residue GOL A 504
source : AC4

33) chain A
residue 39
type
ligand
sequence D
description binding site for residue CA A 505
source : AC5

34) chain A
residue 41
type
ligand
sequence T
description binding site for residue CA A 505
source : AC5

35) chain A
residue 44
type
ligand
sequence G
description binding site for residue CA A 505
source : AC5

36) chain A
residue 55
type
ligand
sequence E
description binding site for residue CA A 505
source : AC5

37) chain A
residue 158
type
ligand
sequence S
description binding site for residue GOL A 506
source : AC6

38) chain A
residue 164
type
ligand
sequence K
description binding site for residue GOL A 506
source : AC6

39) chain A
residue 166
type
ligand
sequence K
description binding site for residue GOL A 506
source : AC6

40) chain A
residue 197
type
ligand
sequence H
description binding site for residue GOL A 506
source : AC6

41) chain A
residue 199
type
ligand
sequence D
description binding site for residue GOL A 506
source : AC6

42) chain A
residue 179
type
ligand
sequence T
description binding site for residue 93X B 508
source : AD5

43) chain A
residue 180
type
ligand
sequence A
description binding site for residue 93X B 508
source : AD5

44) chain A
residue 181
type
ligand
sequence V
description binding site for residue 93X B 508
source : AD5

45) chain A
residue 142-148
type NP_BIND
ligand
sequence GGGTGSG
description GTP. {ECO:0000255}.
source Swiss-Prot : SWS_FT_FI2

46) chain A
residue 9-12
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence VGQA
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

47) chain A
residue 15-16
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence QI
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

48) chain A
residue 69-71
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence DLE
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

49) chain A
residue 98-102
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence DAANN
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

50) chain A
residue 140
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence S
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

51) chain A
residue 142-146
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence GGGTG
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

52) chain A
residue 171-174
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence IYPA
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

53) chain A
residue 177-179
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence VST
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

54) chain A
residue 183
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence E
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

55) chain A
residue 206
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence N
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

56) chain A
residue 209
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence I
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

57) chain A
residue 224
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence Y
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

58) chain A
residue 227-228
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence LN
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

59) chain A
residue 231
type binding
ligand GTP: GUANOSINE-5'-TRIPHOSPHATE
sequence I
description GUANOSINE-5'-TRIPHOSPHATE binding site
source pdb_hetatom : GTP_5xag_A_501

60) chain A
residue 101
type binding
ligand 93X: (3~{R},4~{R})-3-(hydroxymethyl)-4-(4-methoxy-3-oxidanyl-phenyl)-1-(3,4,5-trimethoxyphenyl)azetidin-2-one
sequence N
description (3~{R},4~{R})-3-(hydroxymethyl)-4-(4-methoxy-3-oxidanyl-phenyl)-1-(3,4,5-trimethoxyphenyl)azetidin-2-one binding site
source pdb_hetatom : 93X_5xag_B_508

61) chain A
residue 179-181
type binding
ligand 93X: (3~{R},4~{R})-3-(hydroxymethyl)-4-(4-methoxy-3-oxidanyl-phenyl)-1-(3,4,5-trimethoxyphenyl)azetidin-2-one
sequence TAV
description (3~{R},4~{R})-3-(hydroxymethyl)-4-(4-methoxy-3-oxidanyl-phenyl)-1-(3,4,5-trimethoxyphenyl)azetidin-2-one binding site
source pdb_hetatom : 93X_5xag_B_508

62) chain A
residue 158
type binding
ligand GOL: GLYCEROL
sequence S
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_506

63) chain A
residue 162
type binding
ligand GOL: GLYCEROL
sequence G
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_506

64) chain A
residue 164-166
type binding
ligand GOL: GLYCEROL
sequence KSK
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_506

65) chain A
residue 196-199
type binding
ligand GOL: GLYCEROL
sequence EHSD
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_506

66) chain A
residue 216
type binding
ligand GOL: GLYCEROL
sequence N
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_503

67) chain A
residue 272-276
type binding
ligand GOL: GLYCEROL
sequence YAPVI
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_503

68) chain A
residue 286
type binding
ligand GOL: GLYCEROL
sequence L
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_503

69) chain A
residue 294
type binding
ligand GOL: GLYCEROL
sequence A
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_503

70) chain A
residue 300
type binding
ligand GOL: GLYCEROL
sequence N
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_503

71) chain A
residue 306
type binding
ligand GOL: GLYCEROL
sequence D
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

72) chain A
residue 309-310
type binding
ligand GOL: GLYCEROL
sequence HG
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

73) chain A
residue 382-383
type binding
ligand GOL: GLYCEROL
sequence TA
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

74) chain A
residue 385-386
type binding
ligand GOL: GLYCEROL
sequence AE
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

75) chain A
residue 433
type binding
ligand GOL: GLYCEROL
sequence E
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

76) chain A
residue 436-437
type binding
ligand GOL: GLYCEROL
sequence GV
description GLYCEROL binding site
source pdb_hetatom : GOL_5xag_A_504

77) chain A
residue 407
type binding
ligand MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
sequence W
description 2-(N-MORPHOLINO)-ETHANESULFONIC ACID binding site
source pdb_hetatom : MES_5xag_B_507


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