eF-site ID 5x1w-D
PDB Code 5x1w
Chain D

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Title PKM2 in complex with compound 5
Classification TRANSFERASE
Compound Pyruvate kinase PKM
Source (KPYM_HUMAN)
Sequence D:  QTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGP
ASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRT
ATESFASDPILYRPVAVALDTKGPEIRTGAEVELKKGATL
KITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGL
ISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPA
VSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGE
KGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIE
IPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRP
TRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHL
IAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEAS
FKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTA
RQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKAR
GFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP
Description


Functional site

1) chain D
residue 41
type MOD_RES
sequence T
description Phosphothreonine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI10

2) chain D
residue 62
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI11

3) chain D
residue 89
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI11

4) chain D
residue 66
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI12

5) chain D
residue 498
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI12

6) chain D
residue 97
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P11980
source Swiss-Prot : SWS_FT_FI13

7) chain D
residue 100
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P11980
source Swiss-Prot : SWS_FT_FI13

8) chain D
residue 105
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:15592455, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI14

9) chain D
residue 148
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI16

10) chain D
residue 166
type MOD_RES
sequence K
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI17

11) chain D
residue 322
type MOD_RES
sequence K
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI17

12) chain D
residue 175
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI18

13) chain D
residue 195
type MOD_RES
sequence T
description Phosphothreonine => ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI19

14) chain D
residue 266
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI20

15) chain D
residue 270
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI21

16) chain D
residue 305
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000269|PubMed:21700219
source Swiss-Prot : SWS_FT_FI22

17) chain D
residue 403
type MOD_RES
sequence P
description 4-hydroxyproline => ECO:0000269|PubMed:21620138
source Swiss-Prot : SWS_FT_FI23

18) chain D
residue 408
type MOD_RES
sequence P
description 4-hydroxyproline => ECO:0000269|PubMed:21620138
source Swiss-Prot : SWS_FT_FI23

19) chain D
residue 433
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000269|PubMed:24120661, ECO:0000269|PubMed:26787900, ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI24

20) chain D
residue 475
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P52480
source Swiss-Prot : SWS_FT_FI25

21) chain D
residue 115
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI26

22) chain D
residue 266
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI27

23) chain D
residue 270
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI27

24) chain D
residue 166
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternate => ECO:0007744|PubMed:25114211
source Swiss-Prot : SWS_FT_FI28

25) chain D
residue 75
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

26) chain D
residue 77
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

27) chain D
residue 113
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

28) chain D
residue 114
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

29) chain D
residue 120
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

30) chain D
residue 207
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

31) chain D
residue 272
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:23530218, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI3

32) chain D
residue 432
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:15996096, ECO:0000269|PubMed:23530218, ECO:0007744|PDB:1T5A, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI4

33) chain D
residue 482
type BINDING
sequence W
description BINDING => ECO:0000269|PubMed:15996096, ECO:0000269|PubMed:23530218, ECO:0007744|PDB:1T5A, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI4

34) chain D
residue 489
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:15996096, ECO:0000269|PubMed:23530218, ECO:0007744|PDB:1T5A, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI4

35) chain D
residue 516
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:15996096, ECO:0000269|PubMed:23530218, ECO:0007744|PDB:1T5A, ECO:0007744|PDB:4FXF
source Swiss-Prot : SWS_FT_FI4

36) chain D
residue 270
type SITE
sequence K
description Transition state stabilizer => ECO:0000250|UniProtKB:P00549
source Swiss-Prot : SWS_FT_FI5

37) chain D
residue 433
type SITE
sequence K
description Crucial for phosphotyrosine binding => ECO:0000269|PubMed:27199445
source Swiss-Prot : SWS_FT_FI6

38) chain D
residue 37
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18088087, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
source Swiss-Prot : SWS_FT_FI9

39) chain D
residue 70
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:23064226
source Swiss-Prot : SWS_FT_FI1

40) chain D
residue 106
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:23064226
source Swiss-Prot : SWS_FT_FI1

41) chain D
residue 464
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:23064226
source Swiss-Prot : SWS_FT_FI1

42) chain D
residue 73
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:P30613
source Swiss-Prot : SWS_FT_FI2

43) chain D
residue 270
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:P30613
source Swiss-Prot : SWS_FT_FI2

44) chain D
residue 295
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P30613
source Swiss-Prot : SWS_FT_FI2

45) chain D
residue 296
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P30613
source Swiss-Prot : SWS_FT_FI2

46) chain D
residue 328
type BINDING
sequence T
description BINDING => ECO:0000250|UniProtKB:P30613
source Swiss-Prot : SWS_FT_FI2


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