eF-site ID
|
5x1b-C |
PDB Code
|
5x1b |
Chain
|
C |
|
click to enlarge
|
|
Title
|
CO bound cytochrome c oxidase at 20 nsec after pump laser irradiation to release CO from O2 reduction center |
Classification
|
OXIDOREDUCTASE |
Compound
|
Cytochrome c oxidase subunit 1 |
Source
|
ORGANISM_COMMON: Bovine; ORGANISM_SCIENTIFIC: Bos taurus; |
|
Sequence
|
C: |
HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTL
LMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYG
MILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIH
PLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQA
LFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATG
FHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYW
HFVDVVWLFLYVSIYWWGS
|
|
Description
|
(1) |
Cytochrome c oxidase subunit 1 (E.C.1.9.3.1), Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, Cytochrome c oxidase subunit 4 isoform 1, mitochondrial, Cytochrome c oxidase subunit 5A, mitochondrial, Cytochrome c oxidase subunit 5B, mitochondrial, Cytochrome c oxidase subunit 6A2, mitochondrial, Cytochrome c oxidase subunit 6B1, Cytochrome c oxidase subunit 6C, Cytochrome c oxidase subunit 7A1, mitochondrial, Cytochrome c oxidase subunit 7B, mitochondrial, Cytochrome c oxidase subunit 7C, mitochondrial, Cytochrome c oxidase subunit 8B, mitochondrial
|
|
|
|
1)
|
chain |
C |
residue |
9 |
type |
|
sequence |
H
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
2)
|
chain |
C |
residue |
50 |
type |
|
sequence |
N
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
3)
|
chain |
C |
residue |
57 |
type |
|
sequence |
W
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
4)
|
chain |
C |
residue |
58 |
type |
|
sequence |
W
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
5)
|
chain |
C |
residue |
64 |
type |
|
sequence |
E
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
6)
|
chain |
C |
residue |
71 |
type |
|
sequence |
H
|
description |
binding site for residue PGV A 608
|
source |
: AC8
|
|
7)
|
chain |
C |
residue |
13 |
type |
|
sequence |
P
|
description |
binding site for residue EDO A 612
|
source |
: AD3
|
|
8)
|
chain |
C |
residue |
58 |
type |
|
sequence |
W
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
9)
|
chain |
C |
residue |
61 |
type |
|
sequence |
V
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
10)
|
chain |
C |
residue |
65 |
type |
|
sequence |
S
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
11)
|
chain |
C |
residue |
66 |
type |
|
sequence |
T
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
12)
|
chain |
C |
residue |
207 |
type |
|
sequence |
H
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
13)
|
chain |
C |
residue |
210 |
type |
|
sequence |
I
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
14)
|
chain |
C |
residue |
221 |
type |
|
sequence |
R
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
15)
|
chain |
C |
residue |
226 |
type |
|
sequence |
H
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
16)
|
chain |
C |
residue |
231 |
type |
|
sequence |
H
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
17)
|
chain |
C |
residue |
233 |
type |
|
sequence |
F
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
18)
|
chain |
C |
residue |
234 |
type |
|
sequence |
G
|
description |
binding site for residue PGV C 302
|
source |
: AE2
|
|
19)
|
chain |
C |
residue |
55 |
type |
|
sequence |
Y
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
20)
|
chain |
C |
residue |
63 |
type |
|
sequence |
R
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
21)
|
chain |
C |
residue |
67 |
type |
|
sequence |
F
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
22)
|
chain |
C |
residue |
175 |
type |
|
sequence |
L
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
23)
|
chain |
C |
residue |
220 |
type |
|
sequence |
F
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
24)
|
chain |
C |
residue |
224 |
type |
|
sequence |
K
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
25)
|
chain |
C |
residue |
226 |
type |
|
sequence |
H
|
description |
binding site for residue CDL C 303
|
source |
: AE3
|
|
26)
|
chain |
C |
residue |
156 |
type |
|
sequence |
R
|
description |
binding site for residue CHD C 304
|
source |
: AE4
|
|
27)
|
chain |
C |
residue |
164 |
type |
|
sequence |
F
|
description |
binding site for residue CHD C 304
|
source |
: AE4
|
|
28)
|
chain |
C |
residue |
99 |
type |
|
sequence |
W
|
description |
binding site for residue CHD C 305
|
source |
: AE5
|
|
29)
|
chain |
C |
residue |
103 |
type |
|
sequence |
H
|
description |
binding site for residue CHD C 305
|
source |
: AE5
|
|
30)
|
chain |
C |
residue |
157 |
type |
|
sequence |
K
|
description |
binding site for residue PEK C 306
|
source |
: AE6
|
|
31)
|
chain |
C |
residue |
158 |
type |
|
sequence |
H
|
description |
binding site for residue PEK C 306
|
source |
: AE6
|
|
32)
|
chain |
C |
residue |
125 |
type |
|
sequence |
N
|
description |
binding site for residue CDL C 307
|
source |
: AE7
|
|
33)
|
chain |
C |
residue |
127 |
type |
|
sequence |
L
|
description |
binding site for residue CDL C 307
|
source |
: AE7
|
|
34)
|
chain |
C |
residue |
131 |
type |
|
sequence |
L
|
description |
binding site for residue CDL C 307
|
source |
: AE7
|
|
35)
|
chain |
C |
residue |
99 |
type |
|
sequence |
W
|
description |
binding site for residue PGV C 308
|
source |
: AE8
|
|
36)
|
chain |
C |
residue |
102 |
type |
|
sequence |
Y
|
description |
binding site for residue PGV C 308
|
source |
: AE8
|
|
37)
|
chain |
C |
residue |
103 |
type |
|
sequence |
H
|
description |
binding site for residue PGV C 308
|
source |
: AE8
|
|
38)
|
chain |
C |
residue |
107 |
type |
|
sequence |
A
|
description |
binding site for residue PGV C 308
|
source |
: AE8
|
|
39)
|
chain |
C |
residue |
149 |
type |
|
sequence |
H
|
description |
binding site for residue EDO C 310
|
source |
: AF1
|
|
40)
|
chain |
C |
residue |
145 |
type |
|
sequence |
T
|
description |
binding site for residue EDO C 311
|
source |
: AF2
|
|
41)
|
chain |
C |
residue |
181 |
type |
|
sequence |
Y
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
42)
|
chain |
C |
residue |
182 |
type |
|
sequence |
Y
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
43)
|
chain |
C |
residue |
184 |
type |
|
sequence |
A
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
44)
|
chain |
C |
residue |
186 |
type |
|
sequence |
F
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
45)
|
chain |
C |
residue |
187 |
type |
|
sequence |
T
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
46)
|
chain |
C |
residue |
188 |
type |
|
sequence |
I
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
47)
|
chain |
C |
residue |
198 |
type |
|
sequence |
F
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
48)
|
chain |
C |
residue |
202 |
type |
|
sequence |
G
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
49)
|
chain |
C |
residue |
203 |
type |
|
sequence |
F
|
description |
binding site for residue PEK G 101
|
source |
: AF6
|
|
50)
|
chain |
C |
residue |
120 |
type |
|
sequence |
G
|
description |
binding site for residue EDO G 104
|
source |
: AF9
|
|
51)
|
chain |
C |
residue |
80 |
type |
|
sequence |
R
|
description |
binding site for residue PEK T 101
|
source |
: AI9
|
|
52)
|
chain |
C |
residue |
184-190 |
type |
TOPO_DOM |
sequence |
APFTISD
|
description |
Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
53)
|
chain |
C |
residue |
257-261 |
type |
TOPO_DOM |
sequence |
YWWGS
|
description |
Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
54)
|
chain |
C |
residue |
191-223 |
type |
TRANSMEM |
sequence |
GVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQL
|
description |
Helical; Name=VI => ECO:0000269|PubMed:27605664
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
55)
|
chain |
C |
residue |
233-256 |
type |
TRANSMEM |
sequence |
FGFEAAAWYWHFVDVVWLFLYVSI
|
description |
Helical; Name=VII => ECO:0000269|PubMed:27605664
|
source |
Swiss-Prot : SWS_FT_FI9
|
|