eF-site ID 5wji-AB
PDB Code 5wji
Chain A, B

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Title Crystal structure of the F61S mutant of HsNUDT16
Classification HYDROLASE
Compound U8 snoRNA-decapping enzyme
Source (NUD16_HUMAN)
Sequence A:  ARRLELGEALALGSGWRHVCHALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGSVDTQDRSLEDGLNRELREELGE
AAAAFRVERTDYRSSHVGPRVVAHFYAKRLTLEELLAVEA
GATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSFIG
SAREQLLEALQDLGLL
B:  RRLELGEALALGSGWRHVCHALLYAPDPGMLFGRIPLRYA
ILMQMRFDGRLGFPGGSVDTQDRSLEDGLNRELREELGEA
AAAFRVERTDYRSSHVPRVVAHFYAKRLTLEELLAVEAGA
TRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSFIGSA
REQLLEALQDLGLL
Description


Functional site

1) chain A
residue 28
type
sequence Y
description binding site for residue SO4 A 302
source : AC1

2) chain A
residue 96
type
sequence R
description binding site for residue SO4 A 302
source : AC1

3) chain A
residue 174
type
sequence A
description binding site for residue SO4 A 302
source : AC1

4) chain A
residue 177
type
sequence D
description binding site for residue SO4 A 302
source : AC1

5) chain A
residue 178
type
sequence L
description binding site for residue SO4 A 302
source : AC1

6) chain A
residue 63
type
sequence D
description binding site for residue ACY A 303
source : AC2

7) chain A
residue 64
type
sequence T
description binding site for residue ACY A 303
source : AC2

8) chain A
residue 66
type
sequence D
description binding site for residue ACY A 303
source : AC2

9) chain A
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

10) chain A
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

11) chain B
residue 24
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

12) chain B
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

13) chain B
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

14) chain B
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

15) chain A
residue 24
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

16) chain A
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

18) chain B
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

20) chain A
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

21) chain B
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

22) chain B
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

23) chain A
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

25) chain B
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

26) chain B
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4


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