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eF-site ID
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5w9l-G |
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PDB Code
|
5w9l |
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Chain
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G |
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click to enlarge
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Title
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MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4 |
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Classification
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VIRAL PROTEIN |
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Compound
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Spike glycoprotein |
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Source
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(5W9L) |
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Sequence
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G: |
VPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQ
EYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKIN
QALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLT
LLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASA
RDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGW
TAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANK
FNQALGAMQTGFTTTNEAFHKVQDAVNNNAQALSKLASEL
SNTFGAISASIGDIIQRLDPPEQDAQIDRLINGRLTTLNA
FVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQG
THIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAAN
PTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSL
NTKYVAPQVTYQNISTNLPPPLL
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Description
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(1) |
Spike glycoprotein, G4 VH, G4 VL
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Functional site
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|
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1)
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chain |
G |
| residue |
887 |
| type |
SITE |
| sequence |
R
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| description |
Cleavage => ECO:0000255|HAMAP-Rule:MF_04099
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| source |
Swiss-Prot : SWS_FT_FI2
|
|
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2)
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chain |
G |
| residue |
774 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
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3)
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chain |
G |
| residue |
785 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
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4)
|
chain |
G |
| residue |
870 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
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5)
|
chain |
G |
| residue |
1176 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
6)
|
chain |
G |
| residue |
1213 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
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