|
eF-site ID
|
5w9l-D |
PDB Code
|
5w9l |
Chain
|
D |
|
click to enlarge
|
|
Title
|
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4 |
Classification
|
VIRAL PROTEIN |
Compound
|
Spike glycoprotein |
Source
|
(5W9L) |
|
Sequence
|
D: |
VPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQ
EYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKIN
QALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLT
LLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASA
RDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGW
TAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANK
FNQALGAMQTGFTTTNEAFHKVQDAVNNNAQALSKLASEL
SNTFGAISASIGDIIQRLDPPEQDAQIDRLINGRLTTLNA
FVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQG
THIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAAN
PTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSL
NTKYVAPQVTYQNISTNLPPPLL
|
|
Description
|
(1) |
Spike glycoprotein, G4 VH, G4 VL
|
|
Functional site
|
|
1)
|
chain |
D |
residue |
887 |
type |
SITE |
sequence |
R
|
description |
Cleavage => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
2)
|
chain |
D |
residue |
774 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
3)
|
chain |
D |
residue |
785 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
4)
|
chain |
D |
residue |
870 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
5)
|
chain |
D |
residue |
1176 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
6)
|
chain |
D |
residue |
1213 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
|
|