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eF-site ID
|
5w9l-A |
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PDB Code
|
5w9l |
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Chain
|
A |
|
click to enlarge
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Title
|
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4 |
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Classification
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VIRAL PROTEIN |
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Compound
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Spike glycoprotein |
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Source
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(5W9L) |
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Sequence
|
A: |
VPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQ
EYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKIN
QALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLT
LLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASA
RDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGW
TAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANK
FNQALGAMQTGFTTTNEAFHKVQDAVNNNAQALSKLASEL
SNTFGAISASIGDIIQRLDPPEQDAQIDRLINGRLTTLNA
FVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQG
THIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAAN
PTNCIAPVNGYFIKTEWSYTGSSFYAPEPITSLNTKYVAP
QVTYQNISTNLPPPLL
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Description
|
(1) |
Spike glycoprotein, G4 VH, G4 VL
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Functional site
|
|
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1)
|
chain |
A |
| residue |
887 |
| type |
SITE |
| sequence |
R
|
| description |
Cleavage => ECO:0000255|HAMAP-Rule:MF_04099
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| source |
Swiss-Prot : SWS_FT_FI2
|
|
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2)
|
chain |
A |
| residue |
774 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
3)
|
chain |
A |
| residue |
785 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
4)
|
chain |
A |
| residue |
870 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
5)
|
chain |
A |
| residue |
1213 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
|