eF-site ID 5w9l-B PDB Code 5w9l Chain B click to enlarge Title MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4 Classification VIRAL PROTEIN Compound Spike glycoprotein Source (5W9L) Sequence B:  YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGII YPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTP QKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTS ATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCG TLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDG NYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGIT QTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIP HSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAI DCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQ AEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSL FSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLS VSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKY SYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWED GDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQY GTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVF QNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSV PVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSML KRRDSTYGPLQTPVGCVLGLVNSSLFVEDCKLPLGQSLCA LPDTPS Description (1)  Spike glycoprotein, G4 VH, G4 VL Functional site 1) chain B residue 66 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 2) chain B residue 104 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 3) chain B residue 125 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 4) chain B residue 155 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 5) chain B residue 166 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 6) chain B residue 222 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 7) chain B residue 236 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 8) chain B residue 244 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 9) chain B residue 410 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 10) chain B residue 487 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 11) chain B residue 592 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 12) chain B residue 619 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3 13) chain B residue 719 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI3

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