eF-site ID 5w6z-ABDE
PDB Code 5w6z
Chain A, B, D, E

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Title Crystal structure of the H24W mutant of HsNUDT16
Classification HYDROLASE
Compound U8 snoRNA-decapping enzyme
Source (NUD16_HUMAN)
Sequence A:  ARRLELGEALALGSGWRHVCWALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGE
AAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAV
EAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSF
IGSAREQLLEALQDLGL
B:  ARRLELGEALALGSGWRHVCWALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGE
AAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAV
EAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSF
IGSAREQLLEALQDLGLLQ
D:  ARRLELGEALALGSGWRHVCWALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGE
AAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAV
EAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSF
IGSAREQLLEALQDLGLLQ
E:  ARRLELGEALALGSGWRHVCWALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGE
AAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAV
EAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSF
IGSAREQLLEALQDLGLL
Description


Functional site

1) chain A
residue 48
type
sequence Q
description binding site for residue NA A 201
source : AC1

2) chain A
residue 50
type
sequence R
description binding site for residue NA A 201
source : AC1

3) chain A
residue 136
type
sequence E
description binding site for residue NA A 201
source : AC1

4) chain A
residue 137
type
sequence V
description binding site for residue NA A 201
source : AC1

5) chain A
residue 24
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

6) chain D
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

7) chain D
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

8) chain D
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

9) chain E
residue 24
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

10) chain E
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

11) chain E
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

12) chain E
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

13) chain A
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

15) chain A
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

16) chain B
residue 24
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

17) chain B
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

18) chain B
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

19) chain B
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

20) chain D
residue 24
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

22) chain B
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

23) chain D
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

24) chain E
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

25) chain A
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

26) chain A
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

27) chain B
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

28) chain B
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

29) chain D
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

30) chain D
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

31) chain E
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

32) chain E
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

33) chain A
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

34) chain A
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

35) chain B
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

36) chain B
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

37) chain D
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

38) chain D
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

39) chain E
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

40) chain E
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4


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