eF-site ID 5w6x-AB
PDB Code 5w6x
Chain A, B

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Title Crystal structure of the HsNUDT16 in complex with Mg+2 and ADP-ribose
Classification HYDROLASE
Compound U8 snoRNA-decapping enzyme
Source (NUD16_HUMAN)
Sequence A:  GARRLELGEALALGSGWRHVCHALLYAPDPGMLFGRIPLR
YAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELG
EAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLA
VEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENS
FIGSAREQLLEALQDLGLL
B:  ARRLELGEALALGSGWRHVCHALLYAPDPGMLFGRIPLRY
AILMQMRFDGRLGFPGGFVDQDRSLEDGLNRELREELGEA
AAAFRVERTDYRSSHVPRVVAHFYAKRLTLEELLAVEAGA
TRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSFIGSA
REQLLEALQDLGLL
Description


Functional site

1) chain A
residue 22
type
sequence V
description binding site for residue APR A 401
source : AC1

2) chain A
residue 24
type
sequence H
description binding site for residue APR A 401
source : AC1

3) chain A
residue 50
type
sequence R
description binding site for residue APR A 401
source : AC1

4) chain A
residue 59
type
sequence G
description binding site for residue APR A 401
source : AC1

5) chain A
residue 60
type
sequence G
description binding site for residue APR A 401
source : AC1

6) chain A
residue 61
type
sequence F
description binding site for residue APR A 401
source : AC1

7) chain A
residue 76
type
sequence E
description binding site for residue APR A 401
source : AC1

8) chain A
residue 80
type
sequence E
description binding site for residue APR A 401
source : AC1

9) chain A
residue 108
type
sequence A
description binding site for residue APR A 401
source : AC1

10) chain A
residue 136
type
sequence E
description binding site for residue APR A 401
source : AC1

11) chain A
residue 164
type
sequence I
description binding site for residue APR A 401
source : AC1

12) chain A
residue 166
type
sequence S
description binding site for residue APR A 401
source : AC1

13) chain A
residue 167
type
sequence A
description binding site for residue APR A 401
source : AC1

14) chain A
residue 170
type
sequence Q
description binding site for residue APR A 401
source : AC1

15) chain B
residue 36
type
sequence F
description binding site for residue APR A 401
source : AC1

16) chain A
residue 76
type
sequence E
description binding site for residue MG A 402
source : AC2

17) chain A
residue 80
type
sequence E
description binding site for residue MG A 402
source : AC2

18) chain A
residue 136
type
sequence E
description binding site for residue MG A 402
source : AC2

19) chain A
residue 59
type
sequence G
description binding site for residue MG A 403
source : AC3

20) chain A
residue 80
type
sequence E
description binding site for residue MG A 403
source : AC3

21) chain A
residue 13
type
sequence L
description binding site for residue ACY A 404
source : AC4

22) chain B
residue 24
type
sequence H
description binding site for residue APR B 401
source : AC5

23) chain B
residue 50
type
sequence R
description binding site for residue APR B 401
source : AC5

24) chain B
residue 51
type
sequence F
description binding site for residue APR B 401
source : AC5

25) chain B
residue 60
type
sequence G
description binding site for residue APR B 401
source : AC5

26) chain B
residue 61
type
sequence F
description binding site for residue APR B 401
source : AC5

27) chain B
residue 76
type
sequence E
description binding site for residue APR B 401
source : AC5

28) chain B
residue 80
type
sequence E
description binding site for residue APR B 401
source : AC5

29) chain B
residue 108
type
sequence A
description binding site for residue APR B 401
source : AC5

30) chain B
residue 136
type
sequence E
description binding site for residue APR B 401
source : AC5

31) chain B
residue 164
type
sequence I
description binding site for residue APR B 401
source : AC5

32) chain B
residue 166
type
sequence S
description binding site for residue APR B 401
source : AC5

33) chain B
residue 170
type
sequence Q
description binding site for residue APR B 401
source : AC5

34) chain B
residue 76
type
sequence E
description binding site for residue MG B 402
source : AC6

35) chain B
residue 80
type
sequence E
description binding site for residue MG B 402
source : AC6

36) chain B
residue 132
type
sequence D
description binding site for residue MG B 402
source : AC6

37) chain B
residue 136
type
sequence E
description binding site for residue MG B 402
source : AC6

38) chain B
residue 59
type
sequence G
description binding site for residue MG B 403
source : AC7

39) chain B
residue 80
type
sequence E
description binding site for residue MG B 403
source : AC7

40) chain B
residue 82
type
sequence G
description binding site for residue ACY B 404
source : AC8

41) chain B
residue 83
type
sequence E
description binding site for residue ACY B 404
source : AC8

42) chain B
residue 84
type
sequence A
description binding site for residue ACY B 404
source : AC8

43) chain B
residue 126
type
sequence G
description binding site for residue ACY B 404
source : AC8

44) chain B
residue 129
type
sequence R
description binding site for residue ACY B 404
source : AC8

45) chain B
residue 30
type
sequence P
description binding site for residue PEG B 405
source : AC9

46) chain B
residue 114
type
sequence R
description binding site for residue PEG B 405
source : AC9

47) chain B
residue 115
type
sequence L
description binding site for residue PEG B 405
source : AC9

48) chain B
residue 116
type
sequence T
description binding site for residue PEG B 405
source : AC9

49) chain B
residue 117
type
sequence L
description binding site for residue PEG B 405
source : AC9

50) chain A
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

51) chain B
residue 59
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:32432673, ECO:0000305|PubMed:26121039, ECO:0007744|PDB:6X7U
source Swiss-Prot : SWS_FT_FI2

52) chain A
residue 24
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

53) chain A
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

54) chain A
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

55) chain A
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

56) chain B
residue 24
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

57) chain B
residue 50
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

58) chain B
residue 57
type BINDING
sequence F
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

59) chain B
residue 170
type BINDING
sequence Q
description BINDING => ECO:0000305|PubMed:26121039
source Swiss-Prot : SWS_FT_FI1

60) chain A
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

61) chain A
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

62) chain B
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

63) chain B
residue 80
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q6TEC1
source Swiss-Prot : SWS_FT_FI3

64) chain A
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

65) chain A
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

66) chain B
residue 99
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4

67) chain B
residue 173
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:32432673, ECO:0007744|PDB:6X7U, ECO:0007744|PDB:6X7V
source Swiss-Prot : SWS_FT_FI4


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