eF-site ID 5w66-A
PDB Code 5w66
Chain A

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Title RNA polymerase I Initial Transcribing Complex State 3
Classification TRANSCRIPTION
Compound DNA-directed RNA polymerase I subunit RPA190
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence A:  MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDN
LGHPVSGGLYDLALGAFLRNLCSTCGLDEKFCPGHQGHIE
LPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYAC
KLRLLQYGLIDESYKLDEITLDISSTLLNELKSKRSEYVD
MAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSR
GKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGST
YILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKAD
SFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTS
LLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQND
VNAFIDSTKAQKVPIPGVKQALEKKEGLFRKHMMGKRVNY
AARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAE
LRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALA
NQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKA
SMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFP
QNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGV
WLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPT
IFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNE
YWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLH
EVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAE
GNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKR
LQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMK
KFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVP
VMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFH
CMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSI
RDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLK
KYNPSALIEHLDVESALKYSKKTLKYRKKHSPHYKQSVKY
DPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDG
VNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQM
NVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADT
FCKSISKVLLSEVIDKVIVTETTAARSYVIHMRFFDNNEY
SEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKNMNKV
QRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEK
LLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTE
GVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTI
VNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQG
METSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIV
VGKLNNVGTGSFDVLAKVPNA
Description (1)  DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase I subunit RPA43, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, RNA polymerase I-specific transcription initiation factor RRN6, RNA polymerase I-specific transcription initiation factor RRN7, RNA polymerase I-specific transcription initiation factor RRN11/RNA Complex


Functional site

1) chain A
residue 102
type
sequence C
description binding site for residue ZN A 1701
source : AC1

2) chain A
residue 105
type
sequence C
description binding site for residue ZN A 1701
source : AC1

3) chain A
residue 107
type
sequence H
description binding site for residue ZN A 1701
source : AC1

4) chain A
residue 233
type
sequence C
description binding site for residue ZN A 1701
source : AC1

5) chain A
residue 236
type
sequence C
description binding site for residue ZN A 1701
source : AC1

6) chain A
residue 62
type
sequence C
description binding site for residue ZN A 1702
source : AC2

7) chain A
residue 65
type
sequence C
description binding site for residue ZN A 1702
source : AC2

8) chain A
residue 72
type
sequence C
description binding site for residue ZN A 1702
source : AC2

9) chain A
residue 74
type
sequence G
description binding site for residue ZN A 1702
source : AC2

10) chain A
residue 75
type
sequence H
description binding site for residue ZN A 1702
source : AC2

11) chain A
residue 102
type ZN_FING
sequence C
description RRN7-type
source Swiss-Prot : SWS_FT_FI1

12) chain A
residue 105
type ZN_FING
sequence C
description RRN7-type
source Swiss-Prot : SWS_FT_FI1

13) chain A
residue 233
type ZN_FING
sequence C
description RRN7-type
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 236
type ZN_FING
sequence C
description RRN7-type
source Swiss-Prot : SWS_FT_FI1


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