|
eF-site ID
|
5w64-A |
PDB Code
|
5w64 |
Chain
|
A |
|
click to enlarge
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Title
|
RNA Polymerase I Initial Transcribing Complex State 1 |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
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Sequence
|
A: |
MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDN
LGHPVSGGLYDLALGAFLRNLCSTCGLDEKFCPGHQGHIE
LPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYAC
KLRLLQYGLIDESYKLDEITLDISSTLLNELKSKRSEYVD
MAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSR
GKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGST
YILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKAD
SFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTS
LLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQND
VNAFIDSTKAQKVPIPGVKQALEKKEGLFRKHMMGKRVNY
AARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAE
LRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALA
NQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKA
SMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFP
QNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGV
WLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPT
IFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNE
YWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLH
EVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAE
GNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKR
LQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMK
KFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVP
VMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFH
CMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSI
RDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLK
KYNPSALIEHLDVESALKYSKKTLKYRKKHSPHYKQSVKY
DPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDG
VNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQM
NVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADT
FCKSISKVLLSEVIDKVIVTETTAARSYVIHMRFFDNNEY
SEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKNMNKV
QRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEK
LLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTE
GVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTI
VNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQG
METSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIV
VGKLNNVGTGSFDVLAKVPNA
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Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase I subunit RPA43, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, RNA polymerase I-specific transcription initiation factor RRN6, RNA polymerase I-specific transcription initiation factor RRN7, RNA polymerase I-specific transcription initiation factor RRN11/RNA Complex
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Functional site
|
|
1)
|
chain |
A |
residue |
102 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1701
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
105 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1701
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
107 |
type |
|
sequence |
H
|
description |
binding site for residue ZN A 1701
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
233 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1701
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
236 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1701
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
62 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1702
|
source |
: AC2
|
|
7)
|
chain |
A |
residue |
65 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1702
|
source |
: AC2
|
|
8)
|
chain |
A |
residue |
72 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 1702
|
source |
: AC2
|
|
9)
|
chain |
A |
residue |
74 |
type |
|
sequence |
G
|
description |
binding site for residue ZN A 1702
|
source |
: AC2
|
|
10)
|
chain |
A |
residue |
75 |
type |
|
sequence |
H
|
description |
binding site for residue ZN A 1702
|
source |
: AC2
|
|
11)
|
chain |
A |
residue |
102 |
type |
ZN_FING |
sequence |
C
|
description |
RRN7-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
12)
|
chain |
A |
residue |
105 |
type |
ZN_FING |
sequence |
C
|
description |
RRN7-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
13)
|
chain |
A |
residue |
233 |
type |
ZN_FING |
sequence |
C
|
description |
RRN7-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
236 |
type |
ZN_FING |
sequence |
C
|
description |
RRN7-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
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