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eF-site ID
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5w3l-ABCDEG |
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PDB Code
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5w3l |
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Chain
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A, B, C, D, E, G |
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click to enlarge
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Title
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CryoEM structure of rhinovirus B14 in complex with C5 Fab (4 degrees Celsius, molar ratio 1:3, full particle) |
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Classification
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VIRUS/IMMUNE SYSTEM |
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Compound
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viral protein 1 |
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Source
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ORGANISM_COMMON: HRV-14, Human rhinovirus B14; ORGANISM_SCIENTIFIC: Human rhinovirus 14; |
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Sequence
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A: |
QTVASISSGPKHTQKVPILTANETGATMPVLPSDSIETRT
TYMHFNGSETDVECFLGRAACVHVTEIQNKDATGIDNHRE
AKLFNDWKINLSSLVQLRKKLELFTYVRFDSEYTILATAS
QPDSANYSSNLVVQAMYVPPGAPNPKEWDDYTWQSASNPS
VFFKVGDTSRFSVPYVGLASAYNCFYDGYSHDDAETQYGI
TVLNHMGSMAFRIVNEHDEHKTLVKIRVYHRAKHVEAWIP
RAPRALPYTSIGRTNYPKNTEPVIKKRKGDIKSY
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| B: |
GLPTTTLPGSGQFLTTDDRQSPSALPNYEPTPRIHIPGKV
HNLLEIIQVDTLIPMNNTHTKDEVNSYLIPLNANRQNEQV
FGTNLFIGDGVFKTTLLGEIVQYYTHWSGSLRFSLMYTGP
ALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIGLQST
IVMTIPWTSGVQFRYTDPDTYTSAGFLSCWYQTSLILPPE
TTGQVYLLSFISACPDFKLRLMKDTQTISQTVALTE
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| C: |
GYSDRVQQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA
SDVNKTSKPDTSVCRFYTLDSKTWTTGSKGWCWKLPDALK
DMGVFGQNMFFHSLGRSGYTVHVQCNATKFHSGCLLVVVI
PEHQLASHEGGNVSVKYTFTHPGERGIDLSSANEVGGPVK
DVIYNMNGTLLGNLLIFPHQFINLRTNNTATIVIPYINSV
PIDSMTRHNNVSLMVIPIAPLTVPTGATPSLPITVTIAPM
CTEFSGIRSKSIVPQ
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| D: |
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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| E: |
AVQLAESGPALVAPSQALSITCTVAGFSLTAYGVAWVRQP
PGAGLEWLGAIWAAGATDYNAALKSRASIAKDNSKSQVFL
AMASLATADTAAYYCAREWDAYGDYWGQGTTVTVSA
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| G: |
DIVLTQSPAALSAAAGATVAATCRASGNIHNALAWYQQKA
GKSPQLLVYAAAALAAGVPSRFSGSGSGTAYALAINSLAA
DDFGAYYCQHFWSTPYTFGGGTKLEIK
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Description
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(1) |
viral protein 1, viral protein 3, viral protein 2, viral protein 4, C5 antibody variable heavy domain, C5 antibody variable light domain
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Functional site
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1)
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chain |
D |
| residue |
68 |
| type |
SITE |
| sequence |
N
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| description |
Cleavage; by autolysis => ECO:0000305|PubMed:8383233
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| source |
Swiss-Prot : SWS_FT_FI1
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