eF-site ID 5vyp-W
PDB Code 5vyp
Chain W

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Title Crystal structure of the Plant Defensin NsD7 bound to PIP2
Classification ANTIMICROBIAL PROTEIN
Compound Defensin NsD7
Source (DEF_NICSU)
Sequence W:  AKDCKRESNTFPGICITKPPCRKACIREKFTDGHCSKILR
RCLCTKPC
Description


Functional site

1) chain W
residue 37
type
sequence I
description binding site for residue PIO U 101
source : AF4

2) chain W
residue 36
type
sequence K
description binding site for residue PIO V 101
source : AG1

3) chain W
residue 38
type
sequence L
description binding site for residue GOL W 103
source : AG2

4) chain W
residue 40
type
sequence R
description binding site for residue GOL W 103
source : AG2

5) chain W
residue 40
type
sequence R
description binding site for residue PIO X 101
source : AG3

6) chain W
residue 1
type
sequence K
description binding site for residues PIO W 101 and GOL W 102
source : AG5

7) chain W
residue 4
type
sequence K
description binding site for residues PIO W 101 and GOL W 102
source : AG5

8) chain W
residue 33
type
sequence H
description binding site for residues PIO W 101 and GOL W 102
source : AG5

9) chain W
residue 35
type
sequence S
description binding site for residues PIO W 101 and GOL W 102
source : AG5

10) chain W
residue 36
type
sequence K
description binding site for residues PIO W 101 and GOL W 102
source : AG5

11) chain W
residue 37
type
sequence I
description binding site for residues PIO W 101 and GOL W 102
source : AG5

12) chain W
residue 38
type
sequence L
description binding site for residues PIO W 101 and GOL W 102
source : AG5

13) chain W
residue 40
type
sequence R
description binding site for residues PIO W 101 and GOL W 102
source : AG5

14) chain W
residue 42
type
sequence L
description binding site for residues PIO W 101 and GOL W 102
source : AG5

15) chain W
residue 4
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

16) chain W
residue 33
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

17) chain W
residue 36
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

18) chain W
residue 39
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

19) chain W
residue 15
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2

20) chain W
residue 37
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2


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