eF-site ID 5vyp-O
PDB Code 5vyp
Chain O

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Title Crystal structure of the Plant Defensin NsD7 bound to PIP2
Classification ANTIMICROBIAL PROTEIN
Compound Defensin NsD7
Source (DEF_NICSU)
Sequence O:  AKDCKRESNTFPGICITKPPCRKACIREKFTDGHCSKILR
RCLCTKPC
Description


Functional site

1) chain O
residue 36
type
sequence K
description binding site for residue PIO M 101
source : AD9

2) chain O
residue 37
type
sequence I
description binding site for residue PIO M 101
source : AD9

3) chain O
residue 1
type
sequence K
description binding site for residue PIO N 101
source : AE3

4) chain O
residue 36
type
sequence K
description binding site for residue PIO N 101
source : AE3

5) chain O
residue 1
type
sequence K
description binding site for residue PIO O 101
source : AE4

6) chain O
residue 4
type
sequence K
description binding site for residue PIO O 101
source : AE4

7) chain O
residue 33
type
sequence H
description binding site for residue PIO O 101
source : AE4

8) chain O
residue 35
type
sequence S
description binding site for residue PIO O 101
source : AE4

9) chain O
residue 36
type
sequence K
description binding site for residue PIO O 101
source : AE4

10) chain O
residue 37
type
sequence I
description binding site for residue PIO O 101
source : AE4

11) chain O
residue 38
type
sequence L
description binding site for residue PIO O 101
source : AE4

12) chain O
residue 40
type
sequence R
description binding site for residue PIO O 101
source : AE4

13) chain O
residue 37
type
sequence I
description binding site for residue PIO P 101
source : AE5

14) chain O
residue 40
type
sequence R
description binding site for residue PIO P 101
source : AE5

15) chain O
residue 13
type
sequence I
description binding site for residues PIO K 101 and GOL Q 102
source : AG4

16) chain O
residue 38
type
sequence L
description binding site for residues PIO K 101 and GOL Q 102
source : AG4

17) chain O
residue 40
type
sequence R
description binding site for residues PIO K 101 and GOL Q 102
source : AG4

18) chain O
residue 4
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

19) chain O
residue 33
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

20) chain O
residue 36
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

21) chain O
residue 39
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

22) chain O
residue 15
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2

23) chain O
residue 37
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2


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