eF-site ID 5vyp-D
PDB Code 5vyp
Chain D

click to enlarge
Title Crystal structure of the Plant Defensin NsD7 bound to PIP2
Classification ANTIMICROBIAL PROTEIN
Compound Defensin NsD7
Source (DEF_NICSU)
Sequence D:  AKDCKRESNTFPGICITKPPCRKACIREKFTDGHCSKILR
RCLCTKPC
Description


Functional site

1) chain D
residue 37
type
sequence I
description binding site for residue PIO C 101
source : AC5

2) chain D
residue 40
type
sequence R
description binding site for residue PIO C 101
source : AC5

3) chain D
residue 1
type
sequence K
description binding site for residue PIO D 101
source : AC7

4) chain D
residue 4
type
sequence K
description binding site for residue PIO D 101
source : AC7

5) chain D
residue 33
type
sequence H
description binding site for residue PIO D 101
source : AC7

6) chain D
residue 35
type
sequence S
description binding site for residue PIO D 101
source : AC7

7) chain D
residue 36
type
sequence K
description binding site for residue PIO D 101
source : AC7

8) chain D
residue 37
type
sequence I
description binding site for residue PIO D 101
source : AC7

9) chain D
residue 38
type
sequence L
description binding site for residue PIO D 101
source : AC7

10) chain D
residue 40
type
sequence R
description binding site for residue PIO D 101
source : AC7

11) chain D
residue 38
type
sequence L
description binding site for residue SO4 D 102
source : AC8

12) chain D
residue 1
type
sequence K
description binding site for residue PIO E 101
source : AC9

13) chain D
residue 36
type
sequence K
description binding site for residue PIO E 101
source : AC9

14) chain D
residue 36
type
sequence K
description binding site for residue PIO F 101
source : AD1

15) chain D
residue 4
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

16) chain D
residue 33
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

17) chain D
residue 36
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

18) chain D
residue 39
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI1

19) chain D
residue 15
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2

20) chain D
residue 37
type SITE
sequence I
description Required for formation of double helix => ECO:0000269|PubMed:27647905
source Swiss-Prot : SWS_FT_FI2


Display surface

Download
Links