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eF-site ID
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5vvr-B |
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PDB Code
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5vvr |
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Chain
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B |
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click to enlarge
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Title
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Ternary complex of RNA Pol II, transcription scaffold and Rad26 |
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Classification
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TRANSCRIPTION/RNA/DNA |
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Compound
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DNA-directed RNA polymerase II subunit RPB1 |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
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Sequence
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B: |
FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDY
TLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYV
TKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTY
EAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSK
NCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQER
SAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVK
LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEI
LEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRR
GTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFF
LGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF
KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGL
KYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR
TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVK
NLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDA
TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIR
DIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGH
IAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEE
EESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATT
FTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA
MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFREL
PAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFR
SYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG
LIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDA
STPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIG
DKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI
PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISK
LLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRH
MVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC
MIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNH
NQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLY
TDRSRDF
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Description
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Functional site
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1)
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chain |
B |
| residue |
1163 |
| type |
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| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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2)
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chain |
B |
| residue |
1166 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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3)
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chain |
B |
| residue |
1185 |
| type |
|
| sequence |
C
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| description |
binding site for residue ZN B 1301
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| source |
: AC4
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4)
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chain |
B |
| residue |
977-989 |
| type |
prosite |
| sequence |
GDKFASRHGQKGT
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
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| source |
prosite : PS01166
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5)
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chain |
B |
| residue |
837 |
| type |
catalytic |
| sequence |
D
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| description |
788
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| source |
MCSA : MCSA1
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6)
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chain |
B |
| residue |
1185 |
| type |
MOD_RES |
| sequence |
C
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| description |
Phosphoserine => ECO:0007744|PubMed:19779198
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| source |
Swiss-Prot : SWS_FT_FI2
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