eF-site ID 5vvr-J
PDB Code 5vvr
Chain J

click to enlarge
Title Ternary complex of RNA Pol II, transcription scaffold and Rad26
Classification TRANSCRIPTION/RNA/DNA
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence J:  MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLG
LKRYCCRRMILTHVDLIEKFLRYNPLEKRD
Description


Functional site

1) chain J
residue 7
type
sequence C
description binding site for residue ZN J 101
source : AC8

2) chain J
residue 10
type
sequence C
description binding site for residue ZN J 101
source : AC8

3) chain J
residue 43
type
sequence R
description binding site for residue ZN J 101
source : AC8

4) chain J
residue 45
type
sequence C
description binding site for residue ZN J 101
source : AC8

5) chain J
residue 46
type
sequence C
description binding site for residue ZN J 101
source : AC8

6) chain J
residue 2-11
type prosite
sequence IVPVRCFSCG
description RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
source prosite : PS01112

7) chain J
residue 10
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
source Swiss-Prot : SWS_FT_FI1

8) chain J
residue 45
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
source Swiss-Prot : SWS_FT_FI1

9) chain J
residue 46
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links