eF-site ID 5vvr-C
PDB Code 5vvr
Chain C

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Title Ternary complex of RNA Pol II, transcription scaffold and Rad26
Classification TRANSCRIPTION/RNA/DNA
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence C:  MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAE
IPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQL
EYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI
VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAK
KGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKE
WPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV
DQVVVRGIDTLQKKVASILLALTQMDQDKV
Description


Functional site
1) chain C
residue 81
type
sequence E
description binding site for residue ZN C 401
source : AC5
2) chain C
residue 86
type
sequence C
description binding site for residue ZN C 401
source : AC5
3) chain C
residue 88
type
sequence C
description binding site for residue ZN C 401
source : AC5
4) chain C
residue 92
type
sequence C
description binding site for residue ZN C 401
source : AC5
5) chain C
residue 95
type
sequence C
description binding site for residue ZN C 401
source : AC5
6) chain C
residue 31-71
type prosite
sequence NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
description RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
source prosite : PS00446

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