eF-site ID 5vvr-A PDB Code 5vvr Chain A click to enlarge Title Ternary complex of RNA Pol II, transcription scaffold and Rad26 Classification TRANSCRIPTION/RNA/DNA Compound DNA-directed RNA polymerase II subunit RPB1 Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Sequence A:  SAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTR AKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLA KPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALA IKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGC GNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEI LNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVR PSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHH AIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA RLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVP KSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR DSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ PSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEM NLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDT LCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIK PKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLI IDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFG NIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAK KKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARD KAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQ QSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRG LTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED IMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIG GSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQV LLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNA QQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEII QNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS NIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFA GVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAAD QEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDE EIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDL TMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKS LDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKY DRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRI YTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRH MALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVE ILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDE ESLVKYMP Description Functional site 1) chain A residue 107 type sequence C description binding site for residue ZN A 1801 source : AC1 2) chain A residue 108 type sequence M description binding site for residue ZN A 1801 source : AC1 3) chain A residue 110 type sequence C description binding site for residue ZN A 1801 source : AC1 4) chain A residue 165 type sequence G description binding site for residue ZN A 1801 source : AC1 5) chain A residue 166 type sequence G description binding site for residue ZN A 1801 source : AC1 6) chain A residue 167 type sequence C description binding site for residue ZN A 1801 source : AC1 7) chain A residue 67 type sequence C description binding site for residue ZN A 1802 source : AC2 8) chain A residue 70 type sequence C description binding site for residue ZN A 1802 source : AC2 9) chain A residue 77 type sequence C description binding site for residue ZN A 1802 source : AC2 10) chain A residue 78 type sequence P description binding site for residue ZN A 1802 source : AC2 11) chain A residue 80 type sequence H description binding site for residue ZN A 1802 source : AC2 12) chain A residue 446 type sequence R description binding site for residue MG A 1803 source : AC3 13) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 14) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1 15) chain A residue 1085 type catalytic sequence H description 788 source MCSA : MCSA1 16) chain A residue 483 type BINDING sequence D description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 17) chain A residue 485 type BINDING sequence D description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 18) chain A residue 107 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 19) chain A residue 110 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 20) chain A residue 148 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 21) chain A residue 167 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1 22) chain A residue 481 type BINDING sequence D description BINDING => ECO:0000255|PROSITE-ProRule:PRU00541 source Swiss-Prot : SWS_FT_FI1

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