eF-site ID 5vdh-D
PDB Code 5vdh
Chain D

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Title Crystal Structure of Human Glycine Receptor alpha-3 Bound to AM-3607, Glycine, and Ivermectin
Classification TRANSPORT PROTEIN
Compound Glycine receptor subunit alpha-3
Source (GLRA3_HUMAN)
Sequence D:  SRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCN
IFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDS
LDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFK
NGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYT
MNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHY
NTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSF
WINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKA
IDIWMAVCLLFVFSALLEYAAVNFVSRAGTKVFIDRAKKI
DTISRACFPLAFLIFNIFYWVIY
Description


Functional site

1) chain D
residue 223-244
type TRANSMEM
sequence YLIQMYIPSLLIVILSWVSFWI
description Helical; Name=1 => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI2

2) chain D
residue 245-249
type TOPO_DOM
sequence NMDAA
description Cytoplasmic => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI3

3) chain D
residue 250-270
type TRANSMEM
sequence PARVALGITTVLTMTTQSSGS
description Helical; Name=2 => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI4

4) chain D
residue 282-302
type TRANSMEM
sequence AIDIWMAVCLLFVFSALLEYA
description Helical; Name=3 => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI5

5) chain D
residue 325-345
type TRANSMEM
sequence ISRACFPLAFLIFNIFYWVIY
description Helical; Name=4 => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI6

6) chain D
residue 192
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

7) chain D
residue 194
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

8) chain D
residue 215
type BINDING
sequence H
description BINDING => ECO:0000250|UniProtKB:P23415
source Swiss-Prot : SWS_FT_FI7

9) chain D
residue 202
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI8

10) chain D
residue 261
type SITE
sequence L
description Important for obstruction of the ion pore in the closed conformation => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI9

11) chain D
residue 271-281
type TOPO_DOM
sequence RASLPKVSYVK
description Extracellular => ECO:0000269|PubMed:26416729
source Swiss-Prot : SWS_FT_FI1

12) chain D
residue 38
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255, ECO:0000269|PubMed:26416729, ECO:0007744|PDB:5CFB
source Swiss-Prot : SWS_FT_FI10


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