eF-site ID 5tis-c
PDB Code 5tis
Chain c

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Title Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence c:  ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVF
WAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPG
GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEE
YSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFF
GGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEG
WIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARR
AFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFY
GPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLM
RSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKN
DIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSP
RSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRE
SEPVLSMPSLD
Description


Functional site

1) chain c
residue 354
type
sequence E
description binding site for residue OEX a 601
source : AK9

2) chain c
residue 357
type
sequence R
description binding site for residue OEX a 601
source : AK9

3) chain c
residue 354
type
sequence E
description binding site for residue CL a 604
source : AL3

4) chain c
residue 28
type
sequence Q
description binding site for residue SQD a 613
source : AM3

5) chain c
residue 36
type
sequence W
description binding site for residue SQD a 613
source : AM3

6) chain c
residue 215
type
sequence K
description binding site for residue LMG a 614
source : AM4

7) chain c
residue 216
type
sequence S
description binding site for residue LMG a 614
source : AM4

8) chain c
residue 218
type
sequence F
description binding site for residue LMG a 614
source : AM4

9) chain c
residue 221
type
sequence E
description binding site for residue LMG a 614
source : AM4

10) chain c
residue 223
type
sequence W
description binding site for residue LMG a 614
source : AM4

11) chain c
residue 33
type
sequence F
description binding site for residue LHG a 616
source : AM6

12) chain c
residue 36
type
sequence W
description binding site for residue LHG a 616
source : AM6

13) chain c
residue 443
type
sequence W
description binding site for residue LHG a 616
source : AM6

14) chain c
residue 447
type
sequence R
description binding site for residue LHG a 616
source : AM6

15) chain c
residue 180
type
sequence M
description binding site for residue LMG b 620
source : AO9

16) chain c
residue 204
type
sequence L
description binding site for residue LMG b 620
source : AO9

17) chain c
residue 95
type
sequence L
description binding site for residue CLA c 501
source : AP2

18) chain c
residue 168
type
sequence L
description binding site for residue CLA c 501
source : AP2

19) chain c
residue 171
type
sequence G
description binding site for residue CLA c 501
source : AP2

20) chain c
residue 172
type
sequence A
description binding site for residue CLA c 501
source : AP2

21) chain c
residue 175
type
sequence L
description binding site for residue CLA c 501
source : AP2

22) chain c
residue 237
type
sequence H
description binding site for residue CLA c 501
source : AP2

23) chain c
residue 289
type
sequence F
description binding site for residue CLA c 501
source : AP2

24) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 501
source : AP2

25) chain c
residue 63
type
sequence W
description binding site for residue CLA c 502
source : AP3

26) chain c
residue 91
type
sequence H
description binding site for residue CLA c 502
source : AP3

27) chain c
residue 95
type
sequence L
description binding site for residue CLA c 502
source : AP3

28) chain c
residue 279
type
sequence L
description binding site for residue CLA c 502
source : AP3

29) chain c
residue 282
type
sequence M
description binding site for residue CLA c 502
source : AP3

30) chain c
residue 286
type
sequence A
description binding site for residue CLA c 502
source : AP3

31) chain c
residue 297
type
sequence Y
description binding site for residue CLA c 502
source : AP3

32) chain c
residue 430
type
sequence H
description binding site for residue CLA c 502
source : AP3

33) chain c
residue 433
type
sequence L
description binding site for residue CLA c 502
source : AP3

34) chain c
residue 437
type
sequence F
description binding site for residue CLA c 502
source : AP3

35) chain c
residue 60
type
sequence I
description binding site for residue CLA c 503
source : AP4

36) chain c
residue 61
type
sequence V
description binding site for residue CLA c 503
source : AP4

37) chain c
residue 64
type
sequence A
description binding site for residue CLA c 503
source : AP4

38) chain c
residue 68
type
sequence T
description binding site for residue CLA c 503
source : AP4

39) chain c
residue 88
type
sequence L
description binding site for residue CLA c 503
source : AP4

40) chain c
residue 91
type
sequence H
description binding site for residue CLA c 503
source : AP4

41) chain c
residue 114
type
sequence V
description binding site for residue CLA c 503
source : AP4

42) chain c
residue 118
type
sequence H
description binding site for residue CLA c 503
source : AP4

43) chain c
residue 279
type
sequence L
description binding site for residue CLA c 503
source : AP4

44) chain c
residue 63
type
sequence W
description binding site for residue CLA c 504
source : AP5

45) chain c
residue 67
type
sequence M
description binding site for residue CLA c 504
source : AP5

46) chain c
residue 70
type
sequence F
description binding site for residue CLA c 504
source : AP5

47) chain c
residue 84
type
sequence Q
description binding site for residue CLA c 504
source : AP5

48) chain c
residue 85
type
sequence G
description binding site for residue CLA c 504
source : AP5

49) chain c
residue 87
type
sequence I
description binding site for residue CLA c 504
source : AP5

50) chain c
residue 425
type
sequence W
description binding site for residue CLA c 504
source : AP5

51) chain c
residue 429
type
sequence S
description binding site for residue CLA c 504
source : AP5

52) chain c
residue 264
type
sequence F
description binding site for residue CLA c 505
source : AP6

53) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 505
source : AP6

54) chain c
residue 441
type
sequence H
description binding site for residue CLA c 505
source : AP6

55) chain c
residue 442
type
sequence L
description binding site for residue CLA c 505
source : AP6

56) chain c
residue 445
type
sequence A
description binding site for residue CLA c 505
source : AP6

57) chain c
residue 449
type
sequence R
description binding site for residue CLA c 505
source : AP6

58) chain c
residue 165
type
sequence L
description binding site for residue CLA c 506
source : AP7

59) chain c
residue 243
type
sequence I
description binding site for residue CLA c 506
source : AP7

60) chain c
residue 247
type
sequence G
description binding site for residue CLA c 506
source : AP7

61) chain c
residue 250
type
sequence W
description binding site for residue CLA c 506
source : AP7

62) chain c
residue 251
type
sequence H
description binding site for residue CLA c 506
source : AP7

63) chain c
residue 255
type
sequence T
description binding site for residue CLA c 506
source : AP7

64) chain c
residue 256
type
sequence P
description binding site for residue CLA c 506
source : AP7

65) chain c
residue 257
type
sequence F
description binding site for residue CLA c 506
source : AP7

66) chain c
residue 259
type
sequence W
description binding site for residue CLA c 506
source : AP7

67) chain c
residue 264
type
sequence F
description binding site for residue CLA c 506
source : AP7

68) chain c
residue 157
type
sequence M
description binding site for residue CLA c 507
source : AP8

69) chain c
residue 158
type
sequence T
description binding site for residue CLA c 507
source : AP8

70) chain c
residue 161
type
sequence L
description binding site for residue CLA c 507
source : AP8

71) chain c
residue 164
type
sequence H
description binding site for residue CLA c 507
source : AP8

72) chain c
residue 168
type
sequence L
description binding site for residue CLA c 507
source : AP8

73) chain c
residue 264
type
sequence F
description binding site for residue CLA c 507
source : AP8

74) chain c
residue 266
type
sequence W
description binding site for residue CLA c 507
source : AP8

75) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 507
source : AP8

76) chain c
residue 274
type
sequence Y
description binding site for residue CLA c 507
source : AP8

77) chain c
residue 275
type
sequence S
description binding site for residue CLA c 507
source : AP8

78) chain c
residue 279
type
sequence L
description binding site for residue CLA c 507
source : AP8

79) chain c
residue 33
type
sequence F
description binding site for residue CLA c 508
source : AP9

80) chain c
residue 36
type
sequence W
description binding site for residue CLA c 508
source : AP9

81) chain c
residue 37
type
sequence A
description binding site for residue CLA c 508
source : AP9

82) chain c
residue 38
type
sequence G
description binding site for residue CLA c 508
source : AP9

83) chain c
residue 39
type
sequence N
description binding site for residue CLA c 508
source : AP9

84) chain c
residue 40
type
sequence A
description binding site for residue CLA c 508
source : AP9

85) chain c
residue 272
type
sequence L
description binding site for residue CLA c 508
source : AP9

86) chain c
residue 276
type
sequence L
description binding site for residue CLA c 508
source : AP9

87) chain c
residue 436
type
sequence F
description binding site for residue CLA c 508
source : AP9

88) chain c
residue 440
type
sequence G
description binding site for residue CLA c 508
source : AP9

89) chain c
residue 443
type
sequence W
description binding site for residue CLA c 508
source : AP9

90) chain c
residue 444
type
sequence H
description binding site for residue CLA c 508
source : AP9

91) chain c
residue 447
type
sequence R
description binding site for residue CLA c 508
source : AP9

92) chain c
residue 39
type
sequence N
description binding site for residue CLA c 509
source : AQ1

93) chain c
residue 49
type
sequence L
description binding site for residue CLA c 509
source : AQ1

94) chain c
residue 52
type
sequence A
description binding site for residue CLA c 509
source : AQ1

95) chain c
residue 53
type
sequence H
description binding site for residue CLA c 509
source : AQ1

96) chain c
residue 56
type
sequence H
description binding site for residue CLA c 509
source : AQ1

97) chain c
residue 268
type
sequence G
description binding site for residue CLA c 509
source : AQ1

98) chain c
residue 271
type
sequence Y
description binding site for residue CLA c 509
source : AQ1

99) chain c
residue 272
type
sequence L
description binding site for residue CLA c 509
source : AQ1

100) chain c
residue 275
type
sequence S
description binding site for residue CLA c 509
source : AQ1

101) chain c
residue 279
type
sequence L
description binding site for residue CLA c 509
source : AQ1

102) chain c
residue 39
type
sequence N
description binding site for residue CLA c 510
source : AQ2

103) chain c
residue 56
type
sequence H
description binding site for residue CLA c 510
source : AQ2

104) chain c
residue 59
type
sequence L
description binding site for residue CLA c 510
source : AQ2

105) chain c
residue 437
type
sequence F
description binding site for residue CLA c 510
source : AQ2

106) chain c
residue 26
type
sequence R
description binding site for residue CLA c 511
source : AQ3

107) chain c
residue 35
type
sequence W
description binding site for residue CLA c 511
source : AQ3

108) chain c
residue 38
type
sequence G
description binding site for residue CLA c 511
source : AQ3

109) chain c
residue 39
type
sequence N
description binding site for residue CLA c 511
source : AQ3

110) chain c
residue 41
type
sequence R
description binding site for residue CLA c 511
source : AQ3

111) chain c
residue 42
type
sequence L
description binding site for residue CLA c 511
source : AQ3

112) chain c
residue 48
type
sequence K
description binding site for residue CLA c 511
source : AQ3

113) chain c
residue 127
type
sequence F
description binding site for residue CLA c 511
source : AQ3

114) chain c
residue 53
type
sequence H
description binding site for residue CLA c 512
source : AQ4

115) chain c
residue 146
type
sequence F
description binding site for residue CLA c 512
source : AQ4

116) chain c
residue 147
type
sequence F
description binding site for residue CLA c 512
source : AQ4

117) chain c
residue 160
type
sequence I
description binding site for residue CLA c 512
source : AQ4

118) chain c
residue 163
type
sequence F
description binding site for residue CLA c 512
source : AQ4

119) chain c
residue 164
type
sequence H
description binding site for residue CLA c 512
source : AQ4

120) chain c
residue 170
type
sequence I
description binding site for residue CLA c 512
source : AQ4

121) chain c
residue 50
type
sequence L
description binding site for residue CLA c 513
source : AQ5

122) chain c
residue 54
type
sequence V
description binding site for residue CLA c 513
source : AQ5

123) chain c
residue 124
type
sequence V
description binding site for residue CLA c 513
source : AQ5

124) chain c
residue 128
type
sequence G
description binding site for residue CLA c 513
source : AQ5

125) chain c
residue 131
type
sequence Y
description binding site for residue CLA c 513
source : AQ5

126) chain c
residue 132
type
sequence H
description binding site for residue CLA c 513
source : AQ5

127) chain c
residue 140
type
sequence L
description binding site for residue CLA c 513
source : AQ5

128) chain c
residue 143
type
sequence Y
description binding site for residue CLA c 513
source : AQ5

129) chain c
residue 121
type
sequence S
description binding site for residue BCR c 514
source : AQ6

130) chain c
residue 124
type
sequence V
description binding site for residue BCR c 514
source : AQ6

131) chain c
residue 209
type
sequence I
description binding site for residue BCR c 515
source : AQ7

132) chain c
residue 213
type
sequence L
description binding site for residue BCR c 515
source : AQ7

133) chain c
residue 236
type
sequence G
description binding site for residue BCR c 515
source : AQ7

134) chain c
residue 240
type
sequence I
description binding site for residue BCR c 515
source : AQ7

135) chain c
residue 264
type
sequence F
description binding site for residue BCR c 515
source : AQ7

136) chain c
residue 217
type
sequence P
description binding site for residue DGD c 516
source : AQ8

137) chain c
residue 219
type
sequence G
description binding site for residue DGD c 516
source : AQ8

138) chain c
residue 220
type
sequence G
description binding site for residue DGD c 516
source : AQ8

139) chain c
residue 221
type
sequence E
description binding site for residue DGD c 516
source : AQ8

140) chain c
residue 222
type
sequence G
description binding site for residue DGD c 516
source : AQ8

141) chain c
residue 223
type
sequence W
description binding site for residue DGD c 516
source : AQ8

142) chain c
residue 226
type
sequence S
description binding site for residue DGD c 516
source : AQ8

143) chain c
residue 284
type
sequence F
description binding site for residue DGD c 516
source : AQ8

144) chain c
residue 292
type
sequence F
description binding site for residue DGD c 516
source : AQ8

145) chain c
residue 293
type
sequence N
description binding site for residue DGD c 516
source : AQ8

146) chain c
residue 294
type
sequence N
description binding site for residue DGD c 516
source : AQ8

147) chain c
residue 295
type
sequence T
description binding site for residue DGD c 516
source : AQ8

148) chain c
residue 360
type
sequence D
description binding site for residue DGD c 516
source : AQ8

149) chain c
residue 361
type
sequence F
description binding site for residue DGD c 516
source : AQ8

150) chain c
residue 362
type
sequence R
description binding site for residue DGD c 516
source : AQ8

151) chain c
residue 83
type
sequence E
description binding site for residue DGD c 517
source : AQ9

152) chain c
residue 84
type
sequence Q
description binding site for residue DGD c 517
source : AQ9

153) chain c
residue 85
type
sequence G
description binding site for residue DGD c 517
source : AQ9

154) chain c
residue 406
type
sequence S
description binding site for residue DGD c 517
source : AQ9

155) chain c
residue 418
type
sequence N
description binding site for residue DGD c 517
source : AQ9

156) chain c
residue 419
type
sequence F
description binding site for residue DGD c 517
source : AQ9

157) chain c
residue 420
type
sequence V
description binding site for residue DGD c 517
source : AQ9

158) chain c
residue 425
type
sequence W
description binding site for residue DGD c 517
source : AQ9

159) chain c
residue 405
type
sequence N
description binding site for residue DGD c 518
source : AR1

160) chain c
residue 406
type
sequence S
description binding site for residue DGD c 518
source : AR1

161) chain c
residue 415
type
sequence N
description binding site for residue DGD c 518
source : AR1

162) chain c
residue 416
type
sequence S
description binding site for residue DGD c 518
source : AR1

163) chain c
residue 417
type
sequence V
description binding site for residue DGD c 518
source : AR1

164) chain c
residue 418
type
sequence N
description binding site for residue DGD c 518
source : AR1

165) chain c
residue 74
type
sequence H
description binding site for residue LMG c 519
source : AR2

166) chain c
residue 204
type
sequence L
description binding site for residue LMG c 520
source : AR3

167) chain c
residue 205
type
sequence D
description binding site for residue LMG c 520
source : AR3

168) chain c
residue 62
type
sequence F
description binding site for residue BCR c 521
source : AR4

169) chain c
residue 55
type
sequence A
description binding site for residue BCR c 522
source : AR5

170) chain c
residue 58
type
sequence G
description binding site for residue BCR c 522
source : AR5

171) chain c
residue 59
type
sequence L
description binding site for residue BCR c 522
source : AR5

172) chain c
residue 122
type
sequence S
description binding site for residue BCR c 522
source : AR5

173) chain c
residue 123
type
sequence A
description binding site for residue BCR c 522
source : AR5

174) chain c
residue 266-280
type TOPO_DOM
sequence WSGEAYLSYSLGALS
description Lumenal => ECO:0000269|PubMed:19219048
source Swiss-Prot : SWS_FT_FI1

175) chain c
residue 462-473
type TOPO_DOM
sequence ESEPVLSMPSLD
description Lumenal => ECO:0000269|PubMed:19219048
source Swiss-Prot : SWS_FT_FI1

176) chain c
residue 281-301
type TRANSMEM
sequence MMGFIATCFVWFNNTVYPSEF
description Helical => ECO:0000255|HAMAP-Rule:MF_00717
source Swiss-Prot : SWS_FT_FI2

177) chain c
residue 437-461
type TRANSMEM
sequence FLVGHLWHAGRARAAAAGFEKGIDR
description Helical => ECO:0000255|HAMAP-Rule:MF_00717
source Swiss-Prot : SWS_FT_FI2


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