eF-site ID 5syh-AB
PDB Code 5syh
Chain A, B

click to enlarge
Title Structure of D141A variant of B. pseudomallei KatG
Classification OXIDOREDUCTASE
Compound Catalase-peroxidase
Source (KATG_BURP1)
Sequence A:  GTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKL
DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAG
TYRTADGRGGAGEGQQRFAPLNSWPANANLDKARRLLWPI
KQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW
EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMG
LIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVALI
AGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRT
GKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKS
PAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFD
PAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARYL
GPEVPAEVLLWQDPIPAVDHPLIDAADAAELKAKVLASGL
TVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEA
NQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAG
CAGVEQAAKNAGHAVTVPFAPGRADASQEQTDVESMAVLE
PVADGFRNYLKGKYRVPAEVLLVDKAQLLTLSAPEMTVLL
GGLRVLGANVGQSRHGVFTAREQALTNDFFVNLLDMGTEW
KPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRAL
AEVYGSADAQEKFVRDFVAVWNKVMNLDRFDLA
B:  GTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKL
DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAG
TYRTADGRGGAGEGQQRFAPLNSWPANANLDKARRLLWPI
KQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW
EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMG
LIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVALI
AGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRT
GKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKS
PAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFD
PAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARYL
GPEVPAEVLLWQDPIPAVDHPLIDAADAAELKAKVLASGL
TVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEA
NQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAG
CAGVEQAAKNAGHAVTVPFAPGRADASQEQTDVESMAVLE
PVADGFRNYLKGKYRVPAEVLLVDKAQLLTLSAPEMTVLL
GGLRVLGANVGQSRHGVFTAREQALTNDFFVNLLDMGTEW
KPTAADADVFEGRDRATGELKWTGTRVDLVFGSHSQLRAL
AEVYGSADAQEKFVRDFVAVWNKVMNLDRFDLA
Description


Functional site

1) chain A
residue 104
type
sequence G
description binding site for residue HEM A 801
source : AC1

2) chain A
residue 105
type
sequence L
description binding site for residue HEM A 801
source : AC1

3) chain A
residue 111
type
sequence X
description binding site for residue HEM A 801
source : AC1

4) chain A
residue 241
type
sequence P
description binding site for residue HEM A 801
source : AC1

5) chain A
residue 274
type
sequence L
description binding site for residue HEM A 801
source : AC1

6) chain A
residue 275
type
sequence I
description binding site for residue HEM A 801
source : AC1

7) chain A
residue 278
type
sequence G
description binding site for residue HEM A 801
source : AC1

8) chain A
residue 279
type
sequence H
description binding site for residue HEM A 801
source : AC1

9) chain A
residue 282
type
sequence G
description binding site for residue HEM A 801
source : AC1

10) chain A
residue 283
type
sequence K
description binding site for residue HEM A 801
source : AC1

11) chain A
residue 284
type
sequence T
description binding site for residue HEM A 801
source : AC1

12) chain A
residue 285
type
sequence H
description binding site for residue HEM A 801
source : AC1

13) chain A
residue 323
type
sequence T
description binding site for residue HEM A 801
source : AC1

14) chain A
residue 324
type
sequence S
description binding site for residue HEM A 801
source : AC1

15) chain A
residue 420
type
sequence W
description binding site for residue HEM A 801
source : AC1

16) chain A
residue 122
type
sequence G
description binding site for residue NA A 802
source : AC2

17) chain A
residue 123
type
sequence R
description binding site for residue NA A 802
source : AC2

18) chain A
residue 124
type
sequence G
description binding site for residue NA A 802
source : AC2

19) chain A
residue 494
type
sequence S
description binding site for residue NA A 802
source : AC2

20) chain A
residue 124
type
sequence G
description binding site for residue CL A 803
source : AC3

21) chain A
residue 198
type
sequence E
description binding site for residue CL A 803
source : AC3

22) chain A
residue 200
type
sequence V
description binding site for residue CL A 803
source : AC3

23) chain A
residue 108
type
sequence R
description binding site for residue OXY A 804
source : AC4

24) chain A
residue 112
type
sequence H
description binding site for residue OXY A 804
source : AC4

25) chain A
residue 141
type
sequence A
description binding site for residue OXY A 804
source : AC4

26) chain A
residue 154
type
sequence P
description binding site for residue MPD A 805
source : AC5

27) chain A
residue 323
type
sequence T
description binding site for residue MPD A 806
source : AC6

28) chain A
residue 381
type
sequence H
description binding site for residue PO4 A 807
source : AC7

29) chain A
residue 382
type
sequence R
description binding site for residue PO4 A 807
source : AC7

30) chain B
residue 104
type
sequence G
description binding site for residue HEM B 801
source : AC8

31) chain B
residue 105
type
sequence L
description binding site for residue HEM B 801
source : AC8

32) chain B
residue 111
type
sequence X
description binding site for residue HEM B 801
source : AC8

33) chain B
residue 239
type
sequence V
description binding site for residue HEM B 801
source : AC8

34) chain B
residue 241
type
sequence P
description binding site for residue HEM B 801
source : AC8

35) chain B
residue 274
type
sequence L
description binding site for residue HEM B 801
source : AC8

36) chain B
residue 275
type
sequence I
description binding site for residue HEM B 801
source : AC8

37) chain B
residue 278
type
sequence G
description binding site for residue HEM B 801
source : AC8

38) chain B
residue 279
type
sequence H
description binding site for residue HEM B 801
source : AC8

39) chain B
residue 282
type
sequence G
description binding site for residue HEM B 801
source : AC8

40) chain B
residue 283
type
sequence K
description binding site for residue HEM B 801
source : AC8

41) chain B
residue 284
type
sequence T
description binding site for residue HEM B 801
source : AC8

42) chain B
residue 285
type
sequence H
description binding site for residue HEM B 801
source : AC8

43) chain B
residue 323
type
sequence T
description binding site for residue HEM B 801
source : AC8

44) chain B
residue 324
type
sequence S
description binding site for residue HEM B 801
source : AC8

45) chain B
residue 388
type
sequence T
description binding site for residue HEM B 801
source : AC8

46) chain B
residue 420
type
sequence W
description binding site for residue HEM B 801
source : AC8

47) chain B
residue 122
type
sequence G
description binding site for residue NA B 802
source : AC9

48) chain B
residue 123
type
sequence R
description binding site for residue NA B 802
source : AC9

49) chain B
residue 124
type
sequence G
description binding site for residue NA B 802
source : AC9

50) chain B
residue 494
type
sequence S
description binding site for residue NA B 802
source : AC9

51) chain B
residue 124
type
sequence G
description binding site for residue CL B 803
source : AD1

52) chain B
residue 198
type
sequence E
description binding site for residue CL B 803
source : AD1

53) chain B
residue 200
type
sequence V
description binding site for residue CL B 803
source : AD1

54) chain B
residue 108
type
sequence R
description binding site for residue OXY B 804
source : AD2

55) chain B
residue 112
type
sequence H
description binding site for residue OXY B 804
source : AD2

56) chain B
residue 141
type
sequence A
description binding site for residue OXY B 804
source : AD2

57) chain B
residue 323
type
sequence T
description binding site for residue MPD B 805
source : AD3

58) chain B
residue 324
type
sequence S
description binding site for residue MPD B 805
source : AD3

59) chain B
residue 380
type
sequence K
description binding site for residue PO4 B 807
source : AD5

60) chain B
residue 381
type
sequence H
description binding site for residue PO4 B 807
source : AD5

61) chain B
residue 382
type
sequence R
description binding site for residue PO4 B 807
source : AD5

62) chain A
residue 271-281
type prosite
sequence TVALIAGGHTF
description PEROXIDASE_1 Peroxidases proximal heme-ligand signature. TVALIAGGHTF
source prosite : PS00435

63) chain A
residue 112
type ACT_SITE
sequence H
description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI1

64) chain B
residue 112
type ACT_SITE
sequence H
description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI1

65) chain A
residue 279
type BINDING
sequence H
description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI2

66) chain B
residue 279
type BINDING
sequence H
description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI2

67) chain A
residue 108
type SITE
sequence R
description Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI3

68) chain B
residue 108
type SITE
sequence R
description Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI3

69) chain A
residue 111
type CROSSLNK
sequence X
description Tryptophyl-tyrosyl-methioninium (Trp-Tyr) (with M-244) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI4

70) chain B
residue 111
type CROSSLNK
sequence X
description Tryptophyl-tyrosyl-methioninium (Trp-Tyr) (with M-244) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI4

71) chain B
residue 238
type CROSSLNK
sequence Y
description Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with W-91) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI5

72) chain B
residue 264
type CROSSLNK
sequence M
description Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with W-91) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI5

73) chain A
residue 238
type CROSSLNK
sequence Y
description Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with W-91) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI5

74) chain A
residue 264
type CROSSLNK
sequence M
description Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with W-91) => ECO:0000255|HAMAP-Rule:MF_01961
source Swiss-Prot : SWS_FT_FI5


Display surface

Download
Links