eF-site ID 5sva-B PDB Code 5sva Chain B click to enlarge Title Mediator-RNA Polymerase II Pre-Initiation Complex Classification TRANSCRIPTION, TRANSFERASE/DNA Compound DNA-directed RNA polymerase II subunit RPB1 Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence B:  DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL QDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTK PMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEA IDELKYELGKVFIGRLPIMLRSKNCYLSEATESDLYKLKE CPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPI SHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLP YIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKD ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKD QDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMS SRAGVSQVLNRYTYSSTLSHLRRTNTPIAKPRQLHNTHWG LVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSE WGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIV EDDESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGL VEYIDAEEEESILIAMQPEDLEPAEADVDPAKRIRVSHHA TTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK QAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFR ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF FRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDD DGLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGI VDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG TIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE CLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRG FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARAR GPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLK ERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNK IDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF Description (1)  DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Mediator of RNA polymerase II transcription subunit 6, Mediator of RNA polymerase II transcription subunit 8, Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, Mediator of RNA polymerase II transcription subunit 20, Mediator of RNA polymerase II transcription subunit 22, Mediator of RNA polymerase II transcription subunit 4, Mediator of RNA polymerase II transcription subunit 7, Mediator of RNA polymerase II transcription subunit 9, Mediator of RNA polymerase II transcription subunit 21, Mediator of RNA polymerase II transcription subunit 31, DNA repair helicase RAD3, DNA repair helicase RAD25, RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5, Transcription initiation factor IIB, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta, TATA-box-binding protein, Transcription initiation factor TFIID subunit 14/DNA Complex Functional site 1) chain B residue 1163 type sequence C description binding site for residue ZN B 1301 source : AC4 2) chain B residue 1166 type sequence C description binding site for residue ZN B 1301 source : AC4 3) chain B residue 1182 type sequence C description binding site for residue ZN B 1301 source : AC4 4) chain B residue 1185 type sequence C description binding site for residue ZN B 1301 source : AC4 5) chain B residue 977-989 type prosite sequence GDKFASRHGQKGT description RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT source prosite : PS01166 6) chain B residue 1185 type CROSSLNK sequence C description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047 source Swiss-Prot : SWS_FT_FI2 7) chain B residue 837 type catalytic sequence D description 788 source MCSA : MCSA1

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