eF-site ID 5qjf-D
PDB Code 5qjf
Chain D

click to enlarge
Title PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z52425517
Classification HYDROLASE
Compound ADP-sugar pyrophosphatase
Source (NUDT5_HUMAN)
Sequence D:  KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTT
ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGL
IDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSN
CTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDL
LQRLDALVAEEHLTVDARVYSYALALKHAN
Description


Functional site

1) chain D
residue 44
type
sequence R
description binding site for residue K0S C 304
source : AD2

2) chain D
residue 46
type
sequence W
description binding site for residue K0S C 304
source : AD2

3) chain D
residue 47
type
sequence E
description binding site for residue K0S C 304
source : AD2

4) chain D
residue 135
type
sequence G
description binding site for residue K0S C 304
source : AD2

5) chain D
residue 136
type
sequence L
description binding site for residue K0S C 304
source : AD2

6) chain D
residue 96
type
sequence A
description binding site for residue MG D 301
source : AD4

7) chain D
residue 116
type
sequence E
description binding site for residue MG D 301
source : AD4

8) chain D
residue 96
type
sequence A
description binding site for residue MG D 302
source : AD5

9) chain D
residue 97
type
sequence G
description binding site for residue MG D 302
source : AD5

10) chain D
residue 112
type
sequence E
description binding site for residue MG D 302
source : AD5

11) chain D
residue 116
type
sequence E
description binding site for residue MG D 302
source : AD5

12) chain D
residue 166
type
sequence E
description binding site for residue MG D 302
source : AD5

13) chain D
residue 51
type
sequence R
description binding site for residue EDO D 303
source : AD6

14) chain D
residue 132
type
sequence M
description binding site for residue EDO D 303
source : AD6

15) chain D
residue 139
type
sequence C
description binding site for residue EDO D 303
source : AD6

16) chain D
residue 133
type
sequence D
description binding site for residue EDO D 304
source : AD7

17) chain D
residue 28
type BINDING
sequence W
description in other chain => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI1

18) chain D
residue 84
type BINDING
sequence R
description in other chain => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI1

19) chain D
residue 46
type BINDING
sequence W
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

20) chain D
residue 51
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

21) chain D
residue 96
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

22) chain D
residue 112
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

23) chain D
residue 116
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

24) chain D
residue 166
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:17052728, ECO:0000269|PubMed:18462755, ECO:0000269|PubMed:21768126
source Swiss-Prot : SWS_FT_FI2

25) chain D
residue 98
type BINDING
sequence L
description in other chain => ECO:0000269|PubMed:17052728
source Swiss-Prot : SWS_FT_FI3

26) chain D
residue 133
type BINDING
sequence D
description in other chain => ECO:0000269|PubMed:17052728
source Swiss-Prot : SWS_FT_FI3

27) chain D
residue 45
type MOD_RES
sequence T
description Phosphothreonine => ECO:0000269|PubMed:27257257
source Swiss-Prot : SWS_FT_FI7

28) chain D
residue 74
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:15592455
source Swiss-Prot : SWS_FT_FI8

29) chain D
residue 42
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9


Display surface

Download
Links