eF-site ID 5p2p-AB
PDB Code 5p2p
Chain A, B

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Title X-RAY STRUCTURE OF PHOSPHOLIPASE A2 COMPLEXED WITH A SUBSTRATE-DERIVED INHIBITOR
Classification HYDROLASE(CARBOXYLIC ESTER)
Compound PHOSPHOLIPASE A2
Source Sus scrofa (Pig) (PA21B_PIG)
Sequence A:  ALFQFRSMIKCAIPGSHPLMDFNNYGCYCGWGGSGTPVDE
LDRCCETHDNCYRDAKNLSGCYPYTESYSYSCSNTEITCN
SKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
B:  ALFQFRSMIKCAIPGSHPLMDFNNYGCYCGWGGSGTPVDE
LDRCCETHDNCYRDAKNLSGCYPYTESYSYSCSNTEITCN
SKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
Description (1)  PHOSPHOLIPASE A2 (PHOSPHATIDE-2-ACYL-HYDROLASE) MUTANT WITH TRP 3 REPLACED BY PHE, LEU 31 REPLACED BY TRP, ASP 59 REPLACED BY SER, SER 60 REPLACED BY GLY, 62-66 DELETED, ASN 67 REPLACED BY TYR (W3F, L31W ,D59S, S60G, DEL(62-66), N67Y) (E.C.3.1.1.4) COMPLEX WITH (R) 2-DODECANOYL-AMINO-1-HEXANOL-PHOSPHOGLYCOL


Functional site

1) chain A
residue 28
type
sequence Y
description BINDING SITE FOR RESIDUE CA A 125
source : AC1

2) chain A
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE CA A 125
source : AC1

3) chain A
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE CA A 125
source : AC1

4) chain A
residue 49
type
sequence D
description BINDING SITE FOR RESIDUE CA A 125
source : AC1

5) chain B
residue 28
type
sequence Y
description BINDING SITE FOR RESIDUE CA B 125
source : AC2

6) chain B
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE CA B 125
source : AC2

7) chain B
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE CA B 125
source : AC2

8) chain B
residue 49
type
sequence D
description BINDING SITE FOR RESIDUE CA B 125
source : AC2

9) chain A
residue 71
type
sequence E
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

10) chain A
residue 72
type
sequence S
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

11) chain A
residue 92
type
sequence E
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

12) chain B
residue 71
type
sequence E
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

13) chain B
residue 72
type
sequence S
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

14) chain B
residue 92
type
sequence E
description BINDING SITE FOR RESIDUE CA B 126
source : AC3

15) chain A
residue 2
type
sequence L
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

16) chain A
residue 18
type
sequence P
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

17) chain A
residue 22
type
sequence F
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

18) chain A
residue 28
type
sequence Y
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

19) chain A
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

20) chain A
residue 31
type
sequence W
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

21) chain A
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

22) chain A
residue 48
type
sequence H
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

23) chain A
residue 49
type
sequence D
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

24) chain A
residue 52
type
sequence Y
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

25) chain A
residue 69
type
sequence Y
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

26) chain A
residue 106
type
sequence F
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

27) chain B
residue 31
type
sequence W
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

28) chain B
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE DHG A 126
source : AC4

29) chain A
residue 31
type
sequence W
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

30) chain A
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

31) chain B
residue 2
type
sequence L
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

32) chain B
residue 6
type
sequence R
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

33) chain B
residue 18
type
sequence P
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

34) chain B
residue 28
type
sequence Y
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

35) chain B
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

36) chain B
residue 31
type
sequence W
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

37) chain B
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

38) chain B
residue 45
type
sequence C
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

39) chain B
residue 48
type
sequence H
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

40) chain B
residue 49
type
sequence D
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

41) chain B
residue 52
type
sequence Y
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

42) chain B
residue 53
type
sequence R
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

43) chain B
residue 69
type
sequence Y
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

44) chain B
residue 106
type
sequence F
description BINDING SITE FOR RESIDUE DHG B 127
source : AC5

45) chain A
residue 44-51
type prosite
sequence CCETHDNC
description PA2_HIS Phospholipase A2 histidine active site. CCEtHDnC
source prosite : PS00118

46) chain A
residue 95-105
type prosite
sequence ICNCDRNAAIC
description PA2_ASP Phospholipase A2 aspartic acid active site. ICNCDRNAaIC
source prosite : PS00119

47) chain A
residue 30
type catalytic
sequence G
description 83
source MCSA : MCSA1

48) chain A
residue 28
type catalytic
sequence Y
description 83
source MCSA : MCSA1

49) chain A
residue 32
type catalytic
sequence G
description 83
source MCSA : MCSA1

50) chain A
residue 48
type catalytic
sequence H
description 83
source MCSA : MCSA1

51) chain A
residue 49
type catalytic
sequence D
description 83
source MCSA : MCSA1

52) chain A
residue 52
type catalytic
sequence Y
description 83
source MCSA : MCSA1

53) chain A
residue 78
type catalytic
sequence S
description 83
source MCSA : MCSA1

54) chain A
residue 104
type catalytic
sequence I
description 83
source MCSA : MCSA1

55) chain B
residue 30
type catalytic
sequence G
description 83
source MCSA : MCSA2

56) chain B
residue 28
type catalytic
sequence Y
description 83
source MCSA : MCSA2

57) chain B
residue 32
type catalytic
sequence G
description 83
source MCSA : MCSA2

58) chain B
residue 48
type catalytic
sequence H
description 83
source MCSA : MCSA2

59) chain B
residue 49
type catalytic
sequence D
description 83
source MCSA : MCSA2

60) chain B
residue 52
type catalytic
sequence Y
description 83
source MCSA : MCSA2

61) chain B
residue 78
type catalytic
sequence S
description 83
source MCSA : MCSA2

62) chain B
residue 104
type catalytic
sequence I
description 83
source MCSA : MCSA2

63) chain B
residue 48
type ACT_SITE
sequence H
description ACT_SITE => ECO:0000269|PubMed:6876174
source Swiss-Prot : SWS_FT_FI1

64) chain B
residue 104
type ACT_SITE
sequence I
description ACT_SITE => ECO:0000269|PubMed:6876174
source Swiss-Prot : SWS_FT_FI1

65) chain A
residue 48
type ACT_SITE
sequence H
description ACT_SITE => ECO:0000269|PubMed:6876174
source Swiss-Prot : SWS_FT_FI1

66) chain A
residue 104
type ACT_SITE
sequence I
description ACT_SITE => ECO:0000269|PubMed:6876174
source Swiss-Prot : SWS_FT_FI1

67) chain B
residue 32
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

68) chain B
residue 49
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

69) chain A
residue 30
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

70) chain A
residue 32
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

71) chain A
residue 49
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

72) chain B
residue 28
type BINDING
sequence Y
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

73) chain B
residue 30
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

74) chain A
residue 28
type BINDING
sequence Y
description BINDING => ECO:0000250|UniProtKB:P00593
source Swiss-Prot : SWS_FT_FI2

75) chain A
residue 56
type LIPID
sequence K
description N6-palmitoyl lysine => ECO:0000269|PubMed:2498336
source Swiss-Prot : SWS_FT_FI3

76) chain B
residue 56
type LIPID
sequence K
description N6-palmitoyl lysine => ECO:0000269|PubMed:2498336
source Swiss-Prot : SWS_FT_FI3


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