eF-site ID 5onw-IJ
PDB Code 5onw
Chain I, J

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Title X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer and the two H2A/H2B dimers crosslinked via H2A N38C
Classification DNA BINDING PROTEIN
Compound DNA (147-MER)
Source Xenopus laevis (African clawed frog) (H2B11_XENLA)
Sequence I:  ATCCATATCCACCTGGTCCTACTACCAAAAGTGTATTTGG
AAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGC
TGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTT
TGGTAGTAGGACCAGGTGGATATXGAT
J:  ATCCATATCCACCTGGTCCTACTACCAAAAGTGTATTTGG
AAACTGCTCCATCAAAAGGCATGTTCAGCTGGATTCCAGC
TGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTT
TGGTAGTAGGACCAGGTGGATATXGAT
Description


Functional site

1) chain I
residue 70
type
sequence X
description binding site for residue MN I 101
source : AC1

2) chain I
residue 71
type
sequence G
description binding site for residue MN I 101
source : AC1

3) chain I
residue -59
type
sequence G
description binding site for residue MN I 102
source : AC2

4) chain I
residue -58
type
sequence G
description binding site for residue MN I 102
source : AC2

5) chain I
residue 48
type
sequence G
description binding site for residue MN I 103
source : AC3

6) chain I
residue 49
type
sequence G
description binding site for residue MN I 103
source : AC3

7) chain I
residue 61
type
sequence G
description binding site for residue MN I 104
source : AC4

8) chain I
residue -35
type
sequence G
description binding site for residue MN I 105
source : AC5

9) chain I
residue -34
type
sequence G
description binding site for residue MN I 105
source : AC5

10) chain I
residue 27
type
sequence G
description binding site for residue MN I 106
source : AC6

11) chain I
residue 64
type
sequence G
description binding site for residue MN I 107
source : AC7

12) chain I
residue 65
type
sequence G
description binding site for residue MN I 107
source : AC7

13) chain I
residue -2
type
sequence G
description binding site for residue MN I 108
source : AC8

14) chain I
residue -3
type
sequence G
description binding site for residue MN I 108
source : AC8

15) chain I
residue 4
type
sequence A
description binding site for residue MN I 109
source : AC9

16) chain I
residue 5
type
sequence G
description binding site for residue MN I 109
source : AC9

17) chain J
residue 70
type
sequence X
description binding site for residue MN J 101
source : AD1

18) chain J
residue 71
type
sequence G
description binding site for residue MN J 101
source : AD1

19) chain J
residue -58
type
sequence G
description binding site for residue MN J 102
source : AD2

20) chain J
residue -59
type
sequence G
description binding site for residue MN J 102
source : AD2

21) chain J
residue 48
type
sequence G
description binding site for residue MN J 103
source : AD3

22) chain J
residue 27
type
sequence G
description binding site for residue MN J 104
source : AD4

23) chain J
residue -3
type
sequence G
description binding site for residue MN J 105
source : AD5

24) chain J
residue 61
type
sequence G
description binding site for residue MN J 106
source : AD6

25) chain J
residue -35
type
sequence G
description binding site for residue MN J 107
source : AD7

26) chain J
residue -34
type
sequence G
description binding site for residue MN J 107
source : AD7

27) chain J
residue 4
type
sequence A
description binding site for residue MN J 108
source : AD8

28) chain J
residue 5
type
sequence G
description binding site for residue MN J 108
source : AD8

29) chain J
residue 59
type
sequence C
description binding site for residue MN J 109
source : AD9

30) chain I
residue -39
type
sequence A
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

31) chain I
residue -41
type
sequence G
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

32) chain I
residue -40
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

33) chain I
residue -69
type
sequence A
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

34) chain I
residue -70
type
sequence C
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

35) chain J
residue 39
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

36) chain J
residue 41
type
sequence C
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

37) chain J
residue 69
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7

38) chain J
residue 71
type
sequence G
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE7


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