eF-site ID 5ong-IJ
PDB Code 5ong
Chain I, J

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Title X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer
Classification DNA BINDING PROTEIN
Compound DNA (147-MER)
Source Xenopus laevis (African clawed frog) (H2B11_XENLA)
Sequence I:  ATCCATATCCACCTGGTCCTACTACCAAAAGTGTATTTGG
AAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGC
TGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTT
TGGTAGTAGGACCAGGTGGATATXGAT
J:  ATCCATATCCACCTGGTCCTACTACCAAAAGTGTATTTGG
AAACTGCTCCATCAAAAGGCATGTTCAGCTGGATTCCAGC
TGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTT
TGGTAGTAGGACCAGGTGGATATXGAT
Description


Functional site

1) chain I
residue 70
type
sequence X
description binding site for residue MN I 101
source : AC1

2) chain I
residue 71
type
sequence G
description binding site for residue MN I 101
source : AC1

3) chain I
residue -59
type
sequence G
description binding site for residue MN I 102
source : AC2

4) chain I
residue -58
type
sequence G
description binding site for residue MN I 102
source : AC2

5) chain I
residue 55
type
sequence G
description binding site for residue MN I 103
source : AC3

6) chain I
residue 56
type
sequence G
description binding site for residue MN I 103
source : AC3

7) chain I
residue 47
type
sequence T
description binding site for residue MN I 105
source : AC4

8) chain I
residue 48
type
sequence G
description binding site for residue MN I 105
source : AC4

9) chain I
residue 61
type
sequence G
description binding site for residue MN I 106
source : AC5

10) chain I
residue 27
type
sequence G
description binding site for residue MN I 107
source : AC6

11) chain I
residue 5
type
sequence G
description binding site for residue MN I 108
source : AC7

12) chain I
residue -3
type
sequence G
description binding site for residue MN I 109
source : AC8

13) chain I
residue -2
type
sequence G
description binding site for residue MN I 109
source : AC8

14) chain I
residue -35
type
sequence G
description binding site for residue MN I 110
source : AC9

15) chain I
residue -34
type
sequence G
description binding site for residue MN I 110
source : AC9

16) chain J
residue -59
type
sequence G
description binding site for residue MN J 101
source : AD1

17) chain J
residue -16
type
sequence G
description binding site for residue MN J 102
source : AD2

18) chain J
residue -35
type
sequence G
description binding site for residue MN J 103
source : AD3

19) chain J
residue -34
type
sequence G
description binding site for residue MN J 103
source : AD3

20) chain J
residue 70
type
sequence X
description binding site for residue MN J 104
source : AD4

21) chain J
residue 71
type
sequence G
description binding site for residue MN J 104
source : AD4

22) chain J
residue 61
type
sequence G
description binding site for residue MN J 106
source : AD5

23) chain J
residue 27
type
sequence G
description binding site for residue MN J 107
source : AD6

24) chain J
residue -3
type
sequence G
description binding site for residue MN J 108
source : AD7

25) chain J
residue 48
type
sequence G
description binding site for residue MN J 109
source : AD8

26) chain I
residue -39
type
sequence A
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

27) chain I
residue -41
type
sequence G
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

28) chain I
residue -40
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

29) chain I
residue -69
type
sequence A
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

30) chain I
residue -70
type
sequence C
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

31) chain J
residue 39
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

32) chain J
residue 41
type
sequence C
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

33) chain J
residue 69
type
sequence T
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5

34) chain J
residue 71
type
sequence G
description binding site for Di-peptide CYS E 40 and G47 J 70
source : AE5


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