eF-site ID 5nmk-ABC PDB Code 5nmk Chain A, B, C click to enlarge Title HLA A02 presenting SLFNTIAVL Classification IMMUNE SYSTEM Compound HLA class I histocompatibility antigen, A-2 alpha chain Source Homo sapiens (Human) (W0GUW4_9HIV1) Sequence A:  GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDA ASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP B:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM C:  SLFNTIAVL Description (1)  HLA class I histocompatibility antigen, A-2 alpha chain, Beta-2-microglobulin, Gag protein Functional site 1) chain A residue 183 type sequence D description binding site for residue EDO A 301 source : AC1 2) chain A residue 186 type sequence K description binding site for residue EDO A 301 source : AC1 3) chain A residue 207 type sequence S description binding site for residue EDO A 301 source : AC1 4) chain A residue 240 type sequence T description binding site for residue EDO A 301 source : AC1 5) chain A residue 104 type sequence G description binding site for residue EDO A 302 source : AC2 6) chain A residue 106 type sequence D description binding site for residue EDO A 302 source : AC2 7) chain A residue 108 type sequence R description binding site for residue EDO A 302 source : AC2 8) chain A residue 109 type sequence F description binding site for residue EDO A 302 source : AC2 9) chain A residue 115 type sequence Q description binding site for residue EDO A 303 source : AC3 10) chain B residue 56 type sequence F description binding site for residue EDO A 303 source : AC3 11) chain B residue 57 type sequence S description binding site for residue EDO A 303 source : AC3 12) chain B residue 58 type sequence K description binding site for residue EDO A 303 source : AC3 13) chain B residue 60 type sequence W description binding site for residue EDO A 303 source : AC3 14) chain A residue 19 type sequence E description binding site for residue EDO A 304 source : AC4 15) chain A residue 20 type sequence P description binding site for residue EDO A 304 source : AC4 16) chain A residue 71 type sequence S description binding site for residue EDO A 304 source : AC4 17) chain A residue 72 type sequence Q description binding site for residue EDO A 304 source : AC4 18) chain A residue 75 type sequence R description binding site for residue EDO A 304 source : AC4 19) chain A residue 134 type sequence T description binding site for residue EDO A 305 source : AC5 20) chain A residue 135 type sequence A description binding site for residue EDO A 305 source : AC5 21) chain A residue 141 type sequence Q description binding site for residue EDO A 305 source : AC5 22) chain A residue 144 type sequence K description binding site for residue EDO A 305 source : AC5 23) chain A residue 44 type sequence R description binding site for residue EDO A 306 source : AC6 24) chain A residue 45 type sequence M description binding site for residue EDO A 306 source : AC6 25) chain A residue 60 type sequence W description binding site for residue EDO A 306 source : AC6 26) chain A residue 104 type sequence G description binding site for residue GOL A 307 source : AC7 27) chain A residue 105 type sequence S description binding site for residue GOL A 307 source : AC7 28) chain A residue 106 type sequence D description binding site for residue GOL A 307 source : AC7 29) chain A residue 48 type sequence R description binding site for residue SO4 A 308 source : AC8 30) chain A residue 49 type sequence A description binding site for residue SO4 A 308 source : AC8 31) chain A residue 50 type sequence P description binding site for residue SO4 A 308 source : AC8 32) chain A residue 53 type sequence E description binding site for residue SO4 A 308 source : AC8 33) chain A residue 220 type sequence D description binding site for residue SO4 A 309 source : AC9 34) chain A residue 255 type sequence Q description binding site for residue SO4 A 309 source : AC9 35) chain A residue 256 type sequence R description binding site for residue SO4 A 309 source : AC9 36) chain A residue 273 type sequence R description binding site for residue SO4 A 309 source : AC9 37) chain A residue 204 type sequence W description binding site for residue EDO B 301 source : AD1 38) chain A residue 206 type sequence L description binding site for residue EDO B 301 source : AD1 39) chain A residue 234 type sequence R description binding site for residue EDO B 301 source : AD1 40) chain A residue 242 type sequence Q description binding site for residue EDO B 301 source : AD1 41) chain B residue 10 type sequence Y description binding site for residue EDO B 301 source : AD1 42) chain B residue 11 type sequence S description binding site for residue EDO B 301 source : AD1 43) chain B residue 13 type sequence H description binding site for residue EDO B 301 source : AD1 44) chain B residue 14 type sequence P description binding site for residue EDO B 301 source : AD1 45) chain A residue 238 type sequence D description binding site for residue EDO B 302 source : AD2 46) chain B residue 12 type sequence R description binding site for residue EDO B 302 source : AD2 47) chain B residue 13 type sequence H description binding site for residue EDO B 302 source : AD2 48) chain A residue 97 type sequence R description binding site for residue EDO C 101 source : AD3 49) chain A residue 147 type sequence W description binding site for residue EDO C 101 source : AD3 50) chain C residue 6 type sequence I description binding site for residue EDO C 101 source : AD3 51) chain C residue 7 type sequence A description binding site for residue EDO C 101 source : AD3 52) chain A residue 86 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218 source Swiss-Prot : SWS_FT_FI4 53) chain B residue 78-84 type prosite sequence YACRVNH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH source prosite : PS00290 54) chain A residue 257-263 type prosite sequence YTCHVQH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH source prosite : PS00290 55) chain A residue 73 type MOD_RES sequence T description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 56) chain A residue 84 type MOD_RES sequence Y description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 57) chain A residue 143 type MOD_RES sequence T description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 58) chain A residue 146 type MOD_RES sequence K description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 59) chain A residue 171 type MOD_RES sequence Y description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 60) chain B residue 2 type MOD_RES sequence Q description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 61) chain A residue 159 type CARBOHYD sequence Y description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 62) chain B residue 1 type CARBOHYD sequence I description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 63) chain B residue 19 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 64) chain B residue 41 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 65) chain B residue 48 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 66) chain B residue 58 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 67) chain B residue 91 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 68) chain B residue 94 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3

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