eF-site ID 5nme-FGHIJ PDB Code 5nme Chain F, G, H, I, J click to enlarge Title 868 TCR in complex with HLA A02 presenting SLYNTVATL Classification IMMUNE SYSTEM Compound HLA class I histocompatibility antigen, A-2 alpha chain Source Homo sapiens (Human) (5NME) Sequence F:  GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDA ASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP G:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM H:  SLYNTVATL I:  KEVEQNSGPLSVPEGAIASLNCTYSDRGSQSFFWYRQYSG KSPELIMFIYSNGDKEDGRFTAQLNKASQYISLLIRDSKL SDSATYLCAVRTNSGYALNFGKGTSLLVTPHIQKPDPAVY QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVL DMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS J:  DAGVTQSPTHLIKTRGQQVTLRCSPKQGHDTVSWYQQALG QGPQFIFQYYEEEERQRGNFPDRFSGHQFPNYSSELNVNA LLLGDSALYLCASSDTVSYEQYFGPGTRLTVTEDLKNVFP PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQ DPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGR A Description Functional site 1) chain F residue 192 type sequence H description binding site for residue GOL F 301 source : AC7 2) chain F residue 193 type sequence A description binding site for residue GOL F 301 source : AC7 3) chain I residue 60 type sequence R description binding site for residue EDO I 301 source : AC8 4) chain I residue 80 type sequence K description binding site for residue EDO I 301 source : AC8 5) chain I residue 80 type sequence K description binding site for residue EDO I 302 source : AC9 6) chain I residue 82 type sequence S description binding site for residue EDO I 302 source : AC9 7) chain I residue 7 type sequence N description binding site for residue EDO I 303 source : AD1 8) chain I residue 8 type sequence S description binding site for residue EDO I 303 source : AD1 9) chain I residue 9 type sequence G description binding site for residue EDO I 303 source : AD1 10) chain I residue 103 type sequence K description binding site for residue EDO I 303 source : AD1 11) chain J residue 8 type sequence P description binding site for residue EDO J 301 source : AD2 12) chain J residue 9 type sequence T description binding site for residue EDO J 301 source : AD2 13) chain J residue 10 type sequence H description binding site for residue EDO J 301 source : AD2 14) chain J residue 164 type sequence V description binding site for residue SO4 J 302 source : AD3 15) chain J residue 165 type sequence H description binding site for residue SO4 J 302 source : AD3 16) chain J residue 166 type sequence S description binding site for residue SO4 J 302 source : AD3 17) chain J residue 61 type sequence P description binding site for residue SO4 J 303 source : AD4 18) chain J residue 63 type sequence R description binding site for residue SO4 J 303 source : AD4 19) chain J residue 82 type sequence L description binding site for residue SO4 J 303 source : AD4 20) chain J residue 195 type sequence S description binding site for residue SO4 J 304 source : AD5 21) chain J residue 197 type sequence T description binding site for residue SO4 J 304 source : AD5 22) chain J residue 198 type sequence F description binding site for residue SO4 J 304 source : AD5 23) chain J residue 15 type sequence R description binding site for residue SO4 J 305 source : AD6 24) chain J residue 15 type sequence R description binding site for residue SO4 J 305 source : AD6 25) chain J residue 82 type sequence L description binding site for residue SO4 J 305 source : AD6 26) chain J residue 83 type sequence L description binding site for residue SO4 J 305 source : AD6 27) chain J residue 84 type sequence G description binding site for residue SO4 J 305 source : AD6 28) chain F residue 86 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218 source Swiss-Prot : SWS_FT_FI4 29) chain F residue 7 type MOD_RES sequence Y description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 30) chain F residue 73 type MOD_RES sequence T description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 31) chain F residue 84 type MOD_RES sequence Y description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 32) chain F residue 143 type MOD_RES sequence T description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 33) chain F residue 146 type MOD_RES sequence K description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 34) chain F residue 171 type MOD_RES sequence Y description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 35) chain G residue 2 type MOD_RES sequence Q description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 36) chain F residue 116 type CARBOHYD sequence Y description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 37) chain F residue 159 type CARBOHYD sequence Y description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 38) chain G residue 1 type CARBOHYD sequence I description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 39) chain G residue 19 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 40) chain G residue 41 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 41) chain G residue 48 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 42) chain G residue 58 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 43) chain G residue 91 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 44) chain G residue 94 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3

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