eF-site ID 5nm3-ABCD PDB Code 5nm3 Chain A, B, C, D click to enlarge Title Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, pre-illuminated Classification TRANSFERASE Compound Bacteriophytochrome Source (BPHY_DEIRA) Sequence A:  PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADG HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQ AALPPGCPDALQYRATLDWPAGHLSLTVHRVGELLILEFE PTETGPHALRNAMFALESAPNLRALAEVATQTVRELTGFD RVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQ ARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGA VLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHH QTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSL REHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILR FEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQL WPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAW GGATPDKDDLGPRHSFDTYLEEKRGYAEPWHPGEIEEAQD LRDTLTGALEHH B:  PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADG HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQ AALPPGCPDALQYRATLDWPGHLSLTVHRVGELLILEFEP TEAWDTGPHALRNAMFALESAPNLRALAEVATQTVRELTG FDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIP AQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLG GAVLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIAC HHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQ SLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLI LRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALG QLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEV AWKDDLGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDT LTGAL C:  PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADG HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQ AALPPGCPDALQYRATLDWPGHLSLTVHRVGELLILEFEP TEPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVM LYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARA LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLR ATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQTP YVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREH HARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEG RWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPA GADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGA DDLGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTG AL D:  PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADG HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQ AALPPGCPDALQYRATLDWPGHLSLTVHRVGELLILEFEP TEAPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRV MLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQAR ALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVL RATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQT PYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLRE HHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFE GRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWP AGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWLG PRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGAL Description Functional site 1) chain A residue 24 type sequence C description binding site for residue LBV A 600 source : AC1 2) chain A residue 176 type sequence Y description binding site for residue LBV A 600 source : AC1 3) chain A residue 201 type sequence H description binding site for residue LBV A 600 source : AC1 4) chain A residue 203 type sequence F description binding site for residue LBV A 600 source : AC1 5) chain A residue 206 type sequence S description binding site for residue LBV A 600 source : AC1 6) chain A residue 207 type sequence D description binding site for residue LBV A 600 source : AC1 7) chain A residue 208 type sequence I description binding site for residue LBV A 600 source : AC1 8) chain A residue 209 type sequence P description binding site for residue LBV A 600 source : AC1 9) chain A residue 212 type sequence A description binding site for residue LBV A 600 source : AC1 10) chain A residue 216 type sequence Y description binding site for residue LBV A 600 source : AC1 11) chain A residue 254 type sequence R description binding site for residue LBV A 600 source : AC1 12) chain A residue 256 type sequence T description binding site for residue LBV A 600 source : AC1 13) chain A residue 257 type sequence S description binding site for residue LBV A 600 source : AC1 14) chain A residue 260 type sequence H description binding site for residue LBV A 600 source : AC1 15) chain A residue 263 type sequence F description binding site for residue LBV A 600 source : AC1 16) chain A residue 267 type sequence M description binding site for residue LBV A 600 source : AC1 17) chain A residue 272 type sequence S description binding site for residue LBV A 600 source : AC1 18) chain A residue 274 type sequence S description binding site for residue LBV A 600 source : AC1 19) chain A residue 290 type sequence H description binding site for residue LBV A 600 source : AC1 20) chain A residue 463 type sequence L description binding site for residue LBV A 600 source : AC1 21) chain B residue 20 type sequence T description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 22) chain B residue 23 type sequence N description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 23) chain B residue 25 type sequence E description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 24) chain B residue 26 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 25) chain B residue 27 type sequence E description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 26) chain B residue 176 type sequence Y description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 27) chain B residue 201 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 28) chain B residue 203 type sequence F description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 29) chain B residue 207 type sequence D description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 30) chain B residue 208 type sequence I description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 31) chain B residue 209 type sequence P description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 32) chain B residue 211 type sequence Q description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 33) chain B residue 216 type sequence Y description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 34) chain B residue 222 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 35) chain B residue 254 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 36) chain B residue 256 type sequence T description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 37) chain B residue 257 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 38) chain B residue 260 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 39) chain B residue 263 type sequence F description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 40) chain B residue 272 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 41) chain B residue 274 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 42) chain B residue 290 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 43) chain B residue 463 type sequence L description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC2 44) chain B residue 20 type sequence T description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 45) chain B residue 23 type sequence N description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 46) chain B residue 25 type sequence E description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 47) chain B residue 26 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 48) chain B residue 27 type sequence E description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 49) chain B residue 176 type sequence Y description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 50) chain B residue 201 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 51) chain B residue 203 type sequence F description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 52) chain B residue 207 type sequence D description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 53) chain B residue 208 type sequence I description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 54) chain B residue 209 type sequence P description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 55) chain B residue 211 type sequence Q description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 56) chain B residue 216 type sequence Y description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 57) chain B residue 222 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 58) chain B residue 254 type sequence R description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 59) chain B residue 256 type sequence T description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 60) chain B residue 257 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 61) chain B residue 260 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 62) chain B residue 263 type sequence F description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 63) chain B residue 272 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 64) chain B residue 274 type sequence S description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 65) chain B residue 290 type sequence H description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 66) chain B residue 463 type sequence L description binding site for Di-peptide LBV B 600 and CYS B 24 source : AC3 67) chain C residue 20 type sequence T description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 68) chain C residue 23 type sequence N description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 69) chain C residue 25 type sequence E description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 70) chain C residue 26 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 71) chain C residue 27 type sequence E description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 72) chain C residue 176 type sequence Y description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 73) chain C residue 198 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 74) chain C residue 201 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 75) chain C residue 203 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 76) chain C residue 207 type sequence D description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 77) chain C residue 208 type sequence I description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 78) chain C residue 209 type sequence P description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 79) chain C residue 211 type sequence Q description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 80) chain C residue 216 type sequence Y description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 81) chain C residue 222 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 82) chain C residue 254 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 83) chain C residue 256 type sequence T description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 84) chain C residue 257 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 85) chain C residue 260 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 86) chain C residue 263 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 87) chain C residue 272 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 88) chain C residue 274 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 89) chain C residue 288 type sequence A description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 90) chain C residue 290 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 91) chain C residue 463 type sequence L description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC4 92) chain C residue 20 type sequence T description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 93) chain C residue 23 type sequence N description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 94) chain C residue 25 type sequence E description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 95) chain C residue 26 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 96) chain C residue 27 type sequence E description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 97) chain C residue 176 type sequence Y description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 98) chain C residue 198 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 99) chain C residue 201 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 100) chain C residue 203 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 101) chain C residue 207 type sequence D description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 102) chain C residue 208 type sequence I description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 103) chain C residue 209 type sequence P description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 104) chain C residue 211 type sequence Q description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 105) chain C residue 216 type sequence Y description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 106) chain C residue 222 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 107) chain C residue 254 type sequence R description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 108) chain C residue 256 type sequence T description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 109) chain C residue 257 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 110) chain C residue 260 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 111) chain C residue 263 type sequence F description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 112) chain C residue 272 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 113) chain C residue 274 type sequence S description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 114) chain C residue 288 type sequence A description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 115) chain C residue 290 type sequence H description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 116) chain C residue 463 type sequence L description binding site for Di-peptide LBV C 600 and CYS C 24 source : AC5 117) chain D residue 20 type sequence T description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 118) chain D residue 23 type sequence N description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 119) chain D residue 25 type sequence E description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 120) chain D residue 26 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 121) chain D residue 27 type sequence E description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 122) chain D residue 176 type sequence Y description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 123) chain D residue 198 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 124) chain D residue 201 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 125) chain D residue 203 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 126) chain D residue 207 type sequence D description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 127) chain D residue 208 type sequence I description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 128) chain D residue 209 type sequence P description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 129) chain D residue 211 type sequence Q description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 130) chain D residue 216 type sequence Y description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 131) chain D residue 222 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 132) chain D residue 254 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 133) chain D residue 257 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 134) chain D residue 259 type sequence M description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 135) chain D residue 260 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 136) chain D residue 263 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 137) chain D residue 272 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 138) chain D residue 274 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 139) chain D residue 290 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 140) chain D residue 463 type sequence L description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC6 141) chain D residue 20 type sequence T description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 142) chain D residue 23 type sequence N description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 143) chain D residue 25 type sequence E description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 144) chain D residue 26 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 145) chain D residue 27 type sequence E description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 146) chain D residue 176 type sequence Y description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 147) chain D residue 198 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 148) chain D residue 201 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 149) chain D residue 203 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 150) chain D residue 207 type sequence D description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 151) chain D residue 208 type sequence I description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 152) chain D residue 209 type sequence P description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 153) chain D residue 211 type sequence Q description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 154) chain D residue 216 type sequence Y description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 155) chain D residue 222 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 156) chain D residue 254 type sequence R description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 157) chain D residue 257 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 158) chain D residue 259 type sequence M description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 159) chain D residue 260 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 160) chain D residue 263 type sequence F description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 161) chain D residue 272 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 162) chain D residue 274 type sequence S description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 163) chain D residue 290 type sequence H description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 164) chain D residue 463 type sequence L description binding site for Di-peptide LBV D 600 and CYS D 24 source : AC7 165) chain A residue 24 type BINDING sequence C description covalent => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 166) chain B residue 24 type BINDING sequence C description covalent => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 167) chain C residue 24 type BINDING sequence C description covalent => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 168) chain D residue 24 type BINDING sequence C description covalent => ECO:0000305 source Swiss-Prot : SWS_FT_FI1

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