eF-site ID 5ndc-B
PDB Code 5ndc
Chain B

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Title Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography
Classification OXIDOREDUCTASE
Compound Cytochrome c oxidase subunit 1
Source (A0A1J1EEV7_THETH)
Sequence B:  VDEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYTLATHT
AGVIPAGKLERVDPTTVRQEGPWADPAQAVVQTGPNQYTV
YVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEGT
NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMF
GTIVVKE
Description


Functional site

1) chain B
residue 37
type
sequence L
description binding site for residue OLC A 612
source : AD3

2) chain B
residue 114
type
sequence H
description binding site for residue CUA B 201
source : AD4

3) chain B
residue 149
type
sequence C
description binding site for residue CUA B 201
source : AD4

4) chain B
residue 151
type
sequence Q
description binding site for residue CUA B 201
source : AD4

5) chain B
residue 153
type
sequence C
description binding site for residue CUA B 201
source : AD4

6) chain B
residue 157
type
sequence H
description binding site for residue CUA B 201
source : AD4

7) chain B
residue 160
type
sequence M
description binding site for residue CUA B 201
source : AD4

8) chain B
residue 21
type
sequence F
description binding site for residue OLC B 202
source : AD5

9) chain B
residue 28
type
sequence V
description binding site for residue OLC B 202
source : AD5

10) chain B
residue 32
type
sequence L
description binding site for residue OLC B 202
source : AD5

11) chain B
residue 35
type
sequence Y
description binding site for residue OLC B 202
source : AD5

12) chain B
residue 14
type
sequence Y
description binding site for residue OLC C 103
source : AD8

13) chain B
residue 21
type
sequence F
description binding site for residue OLC C 103
source : AD8

14) chain B
residue 35
type
sequence Y
description binding site for residue OLC C 103
source : AD8

15) chain B
residue 112-160
type prosite
sequence VIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQ
YCGLGHQNM
description COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHgfhvegtninvevlpgevstvrytfkrpgeyrii......CnqyCglgHqnM
source prosite : PS00078

16) chain B
residue 86
type catalytic
sequence F
description 735
source MCSA : MCSA1

17) chain B
residue 88
type catalytic
sequence F
description 735
source MCSA : MCSA1

18) chain B
residue 39-168
type TOPO_DOM
sequence THTAGVIPAGKLERVDPTTVRQEGPWADPAQAVVQTGPNQ
YTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHV
EGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQ
NMFGTIVVKE
description Periplasmic
source Swiss-Prot : SWS_FT_FI3

19) chain B
residue 114
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI4

20) chain B
residue 149
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI4

21) chain B
residue 153
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI4

22) chain B
residue 157
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI4


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