eF-site ID 5mdh-B
PDB Code 5mdh
Chain B

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Title CRYSTAL STRUCTURE OF TERNARY COMPLEX OF PORCINE CYTOPLASMIC MALATE DEHYDROGENASE ALPHA-KETOMALONATE AND TNAD AT 2.4 ANGSTROMS RESOLUTION
Classification OXIDOREDUCTASE
Compound MALATE DEHYDROGENASE
Source Sus scrofa (Pig) (MDHC_PIG)
Sequence B:  SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL
DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL
DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK
KSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN
RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVK
LQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLS
SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVP
DDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELA
EEKETAFEFLSSA
Description


Functional site

1) chain B
residue 301
type
sequence G
description BINDING SITE FOR RESIDUE NAD A 334
source : AC1

2) chain B
residue 10
type
sequence G
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

3) chain B
residue 13
type
sequence G
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

4) chain B
residue 14
type
sequence Q
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

5) chain B
residue 15
type
sequence I
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

6) chain B
residue 41
type
sequence D
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

7) chain B
residue 42
type
sequence I
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

8) chain B
residue 86
type
sequence V
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

9) chain B
residue 87
type
sequence G
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

10) chain B
residue 88
type
sequence S
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

11) chain B
residue 107
type
sequence I
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

12) chain B
residue 111
type
sequence Q
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

13) chain B
residue 128
type
sequence V
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

14) chain B
residue 129
type
sequence G
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

15) chain B
residue 130
type
sequence N
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

16) chain B
residue 154
type
sequence L
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

17) chain B
residue 157
type
sequence L
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

18) chain B
residue 186
type
sequence H
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

19) chain B
residue 240
type
sequence S
description BINDING SITE FOR RESIDUE NAD B 334
source : AC3

20) chain B
residue 157
type
sequence L
description BINDING SITE FOR RESIDUE MAK B 335
source : AC4

21) chain B
residue 158
type
sequence D
description BINDING SITE FOR RESIDUE MAK B 335
source : AC4

22) chain B
residue 161
type
sequence R
description BINDING SITE FOR RESIDUE MAK B 335
source : AC4

23) chain B
residue 186
type
sequence H
description BINDING SITE FOR RESIDUE MAK B 335
source : AC4

24) chain B
residue 230
type
sequence G
description BINDING SITE FOR RESIDUE MAK B 335
source : AC4

25) chain B
residue 2
type MOD_RES
sequence E
description N-acetylserine => ECO:0000269|PubMed:3606987
source Swiss-Prot : SWS_FT_FI5

26) chain B
residue 110
type MOD_RES
sequence C
description N6-succinyllysine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI6

27) chain B
residue 214
type MOD_RES
sequence D
description N6-succinyllysine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI6

28) chain B
residue 318
type MOD_RES
sequence E
description N6-succinyllysine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI6

29) chain B
residue 118
type MOD_RES
sequence Y
description N6-acetyllysine => ECO:0000250|UniProtKB:P40925
source Swiss-Prot : SWS_FT_FI7

30) chain B
residue 121
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P40925
source Swiss-Prot : SWS_FT_FI7

31) chain B
residue 217
type MOD_RES
sequence W
description Phosphoserine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI8

32) chain B
residue 309
type MOD_RES
sequence R
description Phosphoserine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI8

33) chain B
residue 230
type MOD_RES
sequence G
description Omega-N-methylarginine => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI9

34) chain B
residue 298
type MOD_RES
sequence I
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P14152
source Swiss-Prot : SWS_FT_FI11

35) chain B
residue 332
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:O88989
source Swiss-Prot : SWS_FT_FI12

36) chain B
residue 159
type catalytic
sequence H
description 526
source MCSA : MCSA2

37) chain B
residue 187
type catalytic
sequence S
description 526
source MCSA : MCSA2

38) chain B
residue 187
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000305|PubMed:2775751
source Swiss-Prot : SWS_FT_FI1

39) chain B
residue 11
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:10075524, ECO:0000269|PubMed:2775751
source Swiss-Prot : SWS_FT_FI2

40) chain B
residue 42
type BINDING
sequence I
description BINDING => ECO:0000269|PubMed:10075524, ECO:0000269|PubMed:2775751
source Swiss-Prot : SWS_FT_FI2

41) chain B
residue 129
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:10075524, ECO:0000269|PubMed:2775751
source Swiss-Prot : SWS_FT_FI2

42) chain B
residue 92
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:10075524
source Swiss-Prot : SWS_FT_FI3

43) chain B
residue 98
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:10075524
source Swiss-Prot : SWS_FT_FI3

44) chain B
residue 131
type BINDING
sequence P
description BINDING => ECO:0000305|PubMed:10075524
source Swiss-Prot : SWS_FT_FI3

45) chain B
residue 162
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:10075524
source Swiss-Prot : SWS_FT_FI3

46) chain B
residue 105
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:10075524
source Swiss-Prot : SWS_FT_FI4

47) chain B
residue 112
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:10075524
source Swiss-Prot : SWS_FT_FI4

48) chain B
residue 241
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P40925
source Swiss-Prot : SWS_FT_FI10

49) chain B
residue 333
type MOD_RES
sequence A
description Phosphoserine => ECO:0000250|UniProtKB:P40925
source Swiss-Prot : SWS_FT_FI10


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