eF-site ID 5m7f-A
PDB Code 5m7f
Chain A

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Title Human porphobilinogen deaminase in complex with DPM cofactor
Classification TRANSFERASE
Compound Porphobilinogen deaminase
Source (HEM3_HUMAN)
Sequence A:  VIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSSL
FTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKR
ENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQR
KFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRM
GWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVG
VLHDPETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQL
YLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLV
GITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDV
Description


Functional site

1) chain A
residue 96
type
sequence S
description binding site for residue DPM A 401
source : AC1

2) chain A
residue 98
type
sequence K
description binding site for residue DPM A 401
source : AC1

3) chain A
residue 99
type
sequence D
description binding site for residue DPM A 401
source : AC1

4) chain A
residue 146
type
sequence S
description binding site for residue DPM A 401
source : AC1

5) chain A
residue 147
type
sequence S
description binding site for residue DPM A 401
source : AC1

6) chain A
residue 149
type
sequence R
description binding site for residue DPM A 401
source : AC1

7) chain A
residue 150
type
sequence R
description binding site for residue DPM A 401
source : AC1

8) chain A
residue 173
type
sequence R
description binding site for residue DPM A 401
source : AC1

9) chain A
residue 189
type
sequence A
description binding site for residue DPM A 401
source : AC1

10) chain A
residue 195
type
sequence R
description binding site for residue DPM A 401
source : AC1

11) chain A
residue 217
type
sequence Q
description binding site for residue DPM A 401
source : AC1

12) chain A
residue 218
type
sequence G
description binding site for residue DPM A 401
source : AC1

13) chain A
residue 261
type
sequence C
description binding site for residue DPM A 401
source : AC1

14) chain A
residue 300
type
sequence H
description binding site for residue SO4 A 402
source : AC2

15) chain A
residue 302
type
sequence P
description binding site for residue SO4 A 402
source : AC2

16) chain A
residue 303
type
sequence A
description binding site for residue SO4 A 402
source : AC2

17) chain A
residue 304
type
sequence Q
description binding site for residue SO4 A 402
source : AC2

18) chain A
residue 119
type
sequence P
description binding site for residue SO4 A 403
source : AC3

19) chain A
residue 246
type
sequence R
description binding site for residue SO4 A 403
source : AC3

20) chain A
residue 299
type
sequence I
description binding site for residue SO4 A 404
source : AC4

21) chain A
residue 300
type
sequence H
description binding site for residue SO4 A 404
source : AC4

22) chain A
residue 327
type
sequence P
description binding site for residue SO4 A 404
source : AC4

23) chain A
residue 278
type MOD_RES
sequence L
description S-(dipyrrolylmethanemethyl)cysteine => ECO:0000269|PubMed:18936296
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 250-266
type prosite
sequence ERAFLRHLEGGCSVPVA
description PORPHOBILINOGEN_DEAM Porphobilinogen deaminase cofactor-binding site. ERaFlrhLeGGCsVPVA
source prosite : PS00533

25) chain A
residue 32
type MOD_RES
sequence R
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

26) chain A
residue 86
type MOD_RES
sequence E
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

27) chain A
residue 164
type MOD_RES
sequence R
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

28) chain A
residue 91
type MOD_RES
sequence D
description N6-acetyllysine => ECO:0000250|UniProtKB:P22907
source Swiss-Prot : SWS_FT_FI3


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