eF-site ID 5m6r-B
PDB Code 5m6r
Chain B

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Title Human porphobilinogen deaminase in complex with reaction intermediate
Classification TRANSFERASE
Compound Porphobilinogen deaminase
Source (HEM3_HUMAN)
Sequence B:  MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMS
TTGDLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIG
AICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRA
AQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATA
GLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDI
LDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVHTAM
KDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPED
DPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNIL
DV
Description


Functional site

1) chain B
residue 126
type
sequence H
description binding site for residue PO4 A 403
source : AC3

2) chain B
residue 128
type
sequence K
description binding site for residue PO4 A 403
source : AC3

3) chain B
residue 181
type
sequence Q
description binding site for residue PO4 A 403
source : AC3

4) chain B
residue 26
type
sequence R
description binding site for residue PO4 B 402
source : AC5

5) chain B
residue 34
type
sequence Q
description binding site for residue PO4 B 402
source : AC5

6) chain B
residue 95
type
sequence H
description binding site for residue PO4 B 402
source : AC5

7) chain B
residue 96
type
sequence S
description binding site for residue PO4 B 402
source : AC5

8) chain B
residue 99
type
sequence D
description binding site for residue PO4 B 402
source : AC5

9) chain B
residue 96
type
sequence S
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

10) chain B
residue 98
type
sequence K
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

11) chain B
residue 99
type
sequence D
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

12) chain B
residue 100
type
sequence L
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

13) chain B
residue 101
type
sequence P
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

14) chain B
residue 102
type
sequence T
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

15) chain B
residue 146
type
sequence S
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

16) chain B
residue 147
type
sequence S
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

17) chain B
residue 149
type
sequence R
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

18) chain B
residue 150
type
sequence R
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

19) chain B
residue 173
type
sequence R
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

20) chain B
residue 189
type
sequence A
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

21) chain B
residue 195
type
sequence R
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

22) chain B
residue 214
type
sequence A
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

23) chain B
residue 215
type
sequence V
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

24) chain B
residue 217
type
sequence Q
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

25) chain B
residue 218
type
sequence G
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

26) chain B
residue 254
type
sequence L
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

27) chain B
residue 259
type
sequence G
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

28) chain B
residue 260
type
sequence G
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

29) chain B
residue 262
type
sequence S
description binding site for Di-peptide 7J8 B 401 and CYS B 261
source : AC6

30) chain B
residue 147
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

31) chain B
residue 261
type MOD_RES
sequence C
description S-(dipyrrolylmethanemethyl)cysteine => ECO:0000269|PubMed:18936296
source Swiss-Prot : SWS_FT_FI4


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