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eF-site ID
|
5m3m-B |
PDB Code
|
5m3m |
Chain
|
B |
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click to enlarge
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Title
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Free monomeric RNA polymerase I at 4.0A resolution |
Classification
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TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
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Sequence
|
B: |
TADFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNAL
TEGPDGGLLNLGVKDIGEKVIFDGKPLNSGYLGNKLSVSV
EQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLL
KLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYE
LVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIR
PSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVT
FRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKD
SFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQ
ASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIR
KLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDE
YLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGS
KMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISH
FRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPC
GLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAA
GPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPG
LPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLD
KEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSI
LANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDN
KLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYT
GYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGD
PITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPIC
AYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQ
TVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS
ETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQ
DSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATG
EELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQP
VKIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRE
CGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKIFIDDSQ
IWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLR
YNVEPK
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Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190 (E.C.2.7.7.6), DNA-directed RNA polymerase I subunit RPA135 (E.C.2.7.7.6), DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerase I subunit RPA43
|
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Functional site
|
|
1)
|
chain |
B |
residue |
532 |
type |
|
sequence |
H
|
description |
binding site for residue SO4 B 1301
|
source |
: AC3
|
|
2)
|
chain |
B |
residue |
698 |
type |
|
sequence |
S
|
description |
binding site for residue SO4 B 1301
|
source |
: AC3
|
|
3)
|
chain |
B |
residue |
699 |
type |
|
sequence |
I
|
description |
binding site for residue SO4 B 1301
|
source |
: AC3
|
|
4)
|
chain |
B |
residue |
700 |
type |
|
sequence |
L
|
description |
binding site for residue SO4 B 1301
|
source |
: AC3
|
|
5)
|
chain |
B |
residue |
701 |
type |
|
sequence |
A
|
description |
binding site for residue SO4 B 1301
|
source |
: AC3
|
|
6)
|
chain |
B |
residue |
1104 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1302
|
source |
: AC4
|
|
7)
|
chain |
B |
residue |
1105 |
type |
|
sequence |
R
|
description |
binding site for residue ZN B 1302
|
source |
: AC4
|
|
8)
|
chain |
B |
residue |
1106 |
type |
|
sequence |
E
|
description |
binding site for residue ZN B 1302
|
source |
: AC4
|
|
9)
|
chain |
B |
residue |
1107 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1302
|
source |
: AC4
|
|
10)
|
chain |
B |
residue |
1172 |
type |
|
sequence |
E
|
description |
binding site for residue ZN B 1302
|
source |
: AC4
|
|
11)
|
chain |
B |
residue |
914-926 |
type |
prosite |
sequence |
GDKFSSRHGQKGV
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFSSrHGQKGV
|
source |
prosite : PS01166
|
|
12)
|
chain |
B |
residue |
1156 |
type |
MOD_RES |
sequence |
S
|
description |
Phosphoserine => ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI4
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