|
eF-site ID
|
5m3m-A |
PDB Code
|
5m3m |
Chain
|
A |
|
click to enlarge
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Title
|
Free monomeric RNA polymerase I at 4.0A resolution |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
Sequence
|
A: |
MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDN
LGHPVSGGLYDLALGAFLRNLCSTCGLDEKFCPGHQGHIE
LPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYAC
KLRLLQYGLIDESYKLDEITLSSTLLNELKSKRSEYVDMA
IAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGK
CDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQ
DSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLV
KADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVL
TTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTI
QNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKH
MMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEP
VTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMS
VEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMN
RQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDG
DEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLI
QDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRS
KIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLI
SKNKIKNEYWGKGSLENEVLFKDGALLCGILDKSQYGASK
YGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGM
DDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPA
DDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSK
CVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQ
ALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI
KPQEYYFHCMAGREGLIDTAGYLQRCLTKQLEGVHVSYDN
SIRDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYAL
LKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQ
SVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFK
SSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEP
STQMTLNTFANVTLGIPRLREIVMTASAAIKTPQMTLPIW
NDVSDEQADTFCKSISKVLLSEVIDKVIVTETTAARSYVI
HMRFFDNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKE
IKKQKKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLE
LAADTEKLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENG
KRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGV
EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTY
LAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLD
SPSARIVVGKLNNVGTGSFDVL
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Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190 (E.C.2.7.7.6), DNA-directed RNA polymerase I subunit RPA135 (E.C.2.7.7.6), DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerase I subunit RPA43
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Functional site
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|
1)
|
chain |
A |
residue |
65 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
67 |
type |
|
sequence |
L
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
71 |
type |
|
sequence |
F
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
72 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
73 |
type |
|
sequence |
P
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
102 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
7)
|
chain |
A |
residue |
103 |
type |
|
sequence |
L
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
8)
|
chain |
A |
residue |
104 |
type |
|
sequence |
F
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
9)
|
chain |
A |
residue |
105 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
10)
|
chain |
A |
residue |
106 |
type |
|
sequence |
H
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
11)
|
chain |
A |
residue |
102 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
12)
|
chain |
A |
residue |
105 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
13)
|
chain |
A |
residue |
233 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
236 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
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