|
eF-site ID
|
5m3m-I |
PDB Code
|
5m3m |
Chain
|
I |
|
click to enlarge
|
|
Title
|
Free monomeric RNA polymerase I at 4.0A resolution |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
Sequence
|
I: |
SVVGSLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQ
FSNLKVVTTTADDAFPSSLRAKKSVVKTSLKKNELKDGAT
IKEKCPQCGNEEMNYHTLATVFYTCTSCGYKFRTNN
|
|
Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190 (E.C.2.7.7.6), DNA-directed RNA polymerase I subunit RPA135 (E.C.2.7.7.6), DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerase I subunit RPA43
|
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Functional site
|
|
1)
|
chain |
I |
residue |
10 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 3001
|
source |
: AC5
|
|
2)
|
chain |
I |
residue |
11 |
type |
|
sequence |
L
|
description |
binding site for residue ZN I 3001
|
source |
: AC5
|
|
3)
|
chain |
I |
residue |
12 |
type |
|
sequence |
D
|
description |
binding site for residue ZN I 3001
|
source |
: AC5
|
|
4)
|
chain |
I |
residue |
13 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 3001
|
source |
: AC5
|
|
5)
|
chain |
I |
residue |
86 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 3002
|
source |
: AC6
|
|
6)
|
chain |
I |
residue |
94 |
type |
|
sequence |
M
|
description |
binding site for residue ZN I 3002
|
source |
: AC6
|
|
7)
|
chain |
I |
residue |
114 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 3002
|
source |
: AC6
|
|
8)
|
chain |
I |
residue |
117 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 3002
|
source |
: AC6
|
|
9)
|
chain |
I |
residue |
119 |
type |
|
sequence |
Y
|
description |
binding site for residue ZN I 3002
|
source |
: AC6
|
|
10)
|
chain |
I |
residue |
86-121 |
type |
prosite |
sequence |
CPQCGNEEMNYHTLATVFYTCTSCGYKF
|
description |
ZF_TFIIS_1 Zinc finger TFIIS-type signature. CpqCgneemnyhtLQLRSaDEGatvfytCts...CgykF
|
source |
prosite : PS00466
|
|
11)
|
chain |
I |
residue |
9-33 |
type |
prosite |
sequence |
FCLDCGDLLENPNAVLGSNVECSQC
|
description |
RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FClDCGDLLenpnavlgsnve..CsqC
|
source |
prosite : PS01030
|
|
12)
|
chain |
I |
residue |
89 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:15665377, ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
13)
|
chain |
I |
residue |
114 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:15665377, ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
14)
|
chain |
I |
residue |
117 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:15665377, ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
|
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