eF-site ID 5m3m-B
PDB Code 5m3m
Chain B

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Title Free monomeric RNA polymerase I at 4.0A resolution
Classification TRANSCRIPTION
Compound DNA-directed RNA polymerase I subunit RPA190
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence B:  TADFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNAL
TEGPDGGLLNLGVKDIGEKVIFDGKPLNSGYLGNKLSVSV
EQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLL
KLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYE
LVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIR
PSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVT
FRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKD
SFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQ
ASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIR
KLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDE
YLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGS
KMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISH
FRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPC
GLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAA
GPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPG
LPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLD
KEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSI
LANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDN
KLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYT
GYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGD
PITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPIC
AYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQ
TVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS
ETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQ
DSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATG
EELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQP
VKIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRE
CGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKIFIDDSQ
IWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLR
YNVEPK
Description (1)  DNA-directed RNA polymerase I subunit RPA190 (E.C.2.7.7.6), DNA-directed RNA polymerase I subunit RPA135 (E.C.2.7.7.6), DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerase I subunit RPA43


Functional site

1) chain B
residue 532
type
sequence H
description binding site for residue SO4 B 1301
source : AC3

2) chain B
residue 698
type
sequence S
description binding site for residue SO4 B 1301
source : AC3

3) chain B
residue 699
type
sequence I
description binding site for residue SO4 B 1301
source : AC3

4) chain B
residue 700
type
sequence L
description binding site for residue SO4 B 1301
source : AC3

5) chain B
residue 701
type
sequence A
description binding site for residue SO4 B 1301
source : AC3

6) chain B
residue 1104
type
sequence C
description binding site for residue ZN B 1302
source : AC4

7) chain B
residue 1105
type
sequence R
description binding site for residue ZN B 1302
source : AC4

8) chain B
residue 1106
type
sequence E
description binding site for residue ZN B 1302
source : AC4

9) chain B
residue 1107
type
sequence C
description binding site for residue ZN B 1302
source : AC4

10) chain B
residue 1172
type
sequence E
description binding site for residue ZN B 1302
source : AC4

11) chain B
residue 1156
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:19779198
source Swiss-Prot : SWS_FT_FI4

12) chain B
residue 914-926
type prosite
sequence GDKFSSRHGQKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKFSSrHGQKGV
source prosite : PS01166


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