|
eF-site ID
|
5m3f-A |
PDB Code
|
5m3f |
Chain
|
A |
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click to enlarge
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Title
|
Yeast RNA polymerase I elongation complex at 3.8A |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
|
A: |
MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDN
LGHPVSGGLYDLALGAFLRNLCSTCGLDEKFCPGHQGHIE
LPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYAC
KLRLLQYGLIDESYKLDEITLSSTLLNELKSKRSEYVDMA
IAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGK
CDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGSTYI
LSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKADSF
FMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLL
IRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVN
AFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKR
VNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYN
IAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRK
ALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTL
HKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNM
HFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHIS
AGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTL
PPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKI
KNEYWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVH
SLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRL
TAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPEL
LKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDG
TMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGR
RVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEY
YFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYD
NSIRDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYA
LLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYK
QSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLF
KSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE
PSTQMANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS
DEQADTFCKSISKVLLSEVIDKVIVTERSYVIHMRFFDNN
EYSEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKKVQ
RDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKL
LMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEG
VNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIV
NEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM
ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVV
GKLNNVGTGSFDVLAKVPN
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Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerase I subunit RPA43/DNA Complex
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Functional site
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|
1)
|
chain |
A |
residue |
62 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
65 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
72 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
75 |
type |
|
sequence |
H
|
description |
binding site for residue ZN A 3001
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
102 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
6)
|
chain |
A |
residue |
105 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
7)
|
chain |
A |
residue |
233 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
8)
|
chain |
A |
residue |
236 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 3002
|
source |
: AC2
|
|
9)
|
chain |
A |
residue |
627 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 3003
|
source |
: AC3
|
|
10)
|
chain |
A |
residue |
629 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 3003
|
source |
: AC3
|
|
11)
|
chain |
A |
residue |
631 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 3003
|
source |
: AC3
|
|
12)
|
chain |
A |
residue |
102 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
13)
|
chain |
A |
residue |
105 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
233 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
15)
|
chain |
A |
residue |
236 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
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