|
|
eF-site ID
|
5m1f-A |
|
PDB Code
|
5m1f |
|
Chain
|
A |
|
click to enlarge
|
|
|
Title
|
Crystal structure of the large terminase nuclease from thermophilic phage G20c |
|
Classification
|
VIRAL PROTEIN |
|
Compound
|
Phage terminase large subunit |
|
Source
|
Thermus phage P7426 (A7XXR1_9CAUD) |
|
|
Sequence
|
A: |
MNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADF
GKNQDYSVFSVLDLDTGAIACLERMNGATWSDQVARLKAL
SEDYGHAYVVADTWVGDAIAEELDAQGINYTPLPVKSSSV
KEQLISNLALLMEKGQVAVPNDKTILDELRNFRYYRTASG
NQVMRAYGRGHDDIVMSLALAYSQYE
|
|
|
Description
|
(1) |
large terminase nuclease
|
|
Functional site
|
|
|
1)
|
chain |
A |
| residue |
294 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:28100693
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
2)
|
chain |
A |
| residue |
347 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:28100693
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
3)
|
chain |
A |
| residue |
429 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:28100693
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
4)
|
chain |
A |
| residue |
300 |
| type |
SITE |
| sequence |
D
|
| description |
Modulates nuclease activity => ECO:0000255|HAMAP-Rule:MF_04146
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
5)
|
chain |
A |
| residue |
428 |
| type |
SITE |
| sequence |
D
|
| description |
Possible stabilization of Magnesium 1 => ECO:0000269|PubMed:28100693
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
|