eF-site ID 5lvp-C
PDB Code 5lvp
Chain C

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Title Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocket
Classification TRANSFERASE
Compound 3-phosphoinositide-dependent protein kinase 1
Source (5LVP)
Sequence C:  RKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE
KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK
LYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALE
YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLNXFV
GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR
AGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATK
RLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
Description (1)  3-phosphoinositide-dependent protein kinase 1 (E.C.2.7.11.1), hydrophobic-motif peptide of PKB/Akt


Functional site

1) chain C
residue 89
type
sequence G
description binding site for residue ATP C 401
source : AC3

2) chain C
residue 91
type
sequence G
description binding site for residue ATP C 401
source : AC3

3) chain C
residue 92
type
sequence S
description binding site for residue ATP C 401
source : AC3

4) chain C
residue 94
type
sequence S
description binding site for residue ATP C 401
source : AC3

5) chain C
residue 96
type
sequence V
description binding site for residue ATP C 401
source : AC3

6) chain C
residue 109
type
sequence A
description binding site for residue ATP C 401
source : AC3

7) chain C
residue 111
type
sequence K
description binding site for residue ATP C 401
source : AC3

8) chain C
residue 160
type
sequence S
description binding site for residue ATP C 401
source : AC3

9) chain C
residue 162
type
sequence A
description binding site for residue ATP C 401
source : AC3

10) chain C
residue 166
type
sequence E
description binding site for residue ATP C 401
source : AC3

11) chain C
residue 209
type
sequence E
description binding site for residue ATP C 401
source : AC3

12) chain C
residue 212
type
sequence L
description binding site for residue ATP C 401
source : AC3

13) chain C
residue 144
type
sequence K
description binding site for residue CL C 402
source : AC4

14) chain C
residue 131
type
sequence R
description binding site for Di-peptide PHE E 11 and SEP E 12
source : AC6

15) chain C
residue 148
type
sequence T
description binding site for Di-peptide PHE E 11 and SEP E 12
source : AC6

16) chain C
residue 149
type
sequence F
description binding site for Di-peptide PHE E 11 and SEP E 12
source : AC6

17) chain C
residue 150
type
sequence Q
description binding site for Di-peptide PHE E 11 and SEP E 12
source : AC6

18) chain C
residue 145
type
sequence L
description binding site for Di-peptide SEP E 12 and TYR E 13
source : AC7

19) chain C
residue 147
type
sequence F
description binding site for Di-peptide SEP E 12 and TYR E 13
source : AC7

20) chain C
residue 148
type
sequence T
description binding site for Di-peptide SEP E 12 and TYR E 13
source : AC7

21) chain C
residue 150
type
sequence Q
description binding site for Di-peptide SEP E 12 and TYR E 13
source : AC7

22) chain C
residue 205
type ACT_SITE
sequence D
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027
source Swiss-Prot : SWS_FT_FI1

23) chain C
residue 92
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

24) chain C
residue 111
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

25) chain C
residue 160
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

26) chain C
residue 166
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

27) chain C
residue 223
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

28) chain C
residue 209
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI3

29) chain C
residue 241
type MOD_RES
sequence X
description Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8
source Swiss-Prot : SWS_FT_FI4

30) chain C
residue 304
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0
source Swiss-Prot : SWS_FT_FI5

31) chain C
residue 354
type MOD_RES
sequence T
description Phosphothreonine; by MELK => ECO:0000269|PubMed:22544756
source Swiss-Prot : SWS_FT_FI6


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