eF-site ID 5lvp-B
PDB Code 5lvp
Chain B

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Title Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocket
Classification TRANSFERASE
Compound 3-phosphoinositide-dependent protein kinase 1
Source (5LVP)
Sequence B:  PRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKIL
EKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE
KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSAL
EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSXF
VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPF
RAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDAT
KRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
Description (1)  3-phosphoinositide-dependent protein kinase 1 (E.C.2.7.11.1), hydrophobic-motif peptide of PKB/Akt


Functional site

1) chain B
residue 89
type
sequence G
description binding site for residue ATP B 401
source : AC2

2) chain B
residue 91
type
sequence G
description binding site for residue ATP B 401
source : AC2

3) chain B
residue 92
type
sequence S
description binding site for residue ATP B 401
source : AC2

4) chain B
residue 94
type
sequence S
description binding site for residue ATP B 401
source : AC2

5) chain B
residue 96
type
sequence V
description binding site for residue ATP B 401
source : AC2

6) chain B
residue 109
type
sequence A
description binding site for residue ATP B 401
source : AC2

7) chain B
residue 111
type
sequence K
description binding site for residue ATP B 401
source : AC2

8) chain B
residue 160
type
sequence S
description binding site for residue ATP B 401
source : AC2

9) chain B
residue 162
type
sequence A
description binding site for residue ATP B 401
source : AC2

10) chain B
residue 166
type
sequence E
description binding site for residue ATP B 401
source : AC2

11) chain B
residue 212
type
sequence L
description binding site for residue ATP B 401
source : AC2

12) chain B
residue 131
type
sequence R
description binding site for Di-peptide PHE G 11 and SEP G 12
source : AD1

13) chain B
residue 148
type
sequence T
description binding site for Di-peptide PHE G 11 and SEP G 12
source : AD1

14) chain B
residue 150
type
sequence Q
description binding site for Di-peptide PHE G 11 and SEP G 12
source : AD1

15) chain B
residue 157
type
sequence F
description binding site for Di-peptide PHE G 11 and SEP G 12
source : AD1

16) chain B
residue 147
type
sequence F
description binding site for Di-peptide SEP G 12 and TYR G 13
source : AD2

17) chain B
residue 148
type
sequence T
description binding site for Di-peptide SEP G 12 and TYR G 13
source : AD2

18) chain B
residue 150
type
sequence Q
description binding site for Di-peptide SEP G 12 and TYR G 13
source : AD2

19) chain B
residue 205
type ACT_SITE
sequence D
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027
source Swiss-Prot : SWS_FT_FI1

20) chain B
residue 223
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

21) chain B
residue 92
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

22) chain B
residue 111
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

23) chain B
residue 160
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

24) chain B
residue 166
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI2

25) chain B
residue 209
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:22999883
source Swiss-Prot : SWS_FT_FI3

26) chain B
residue 241
type MOD_RES
sequence X
description Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8
source Swiss-Prot : SWS_FT_FI4

27) chain B
residue 304
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0
source Swiss-Prot : SWS_FT_FI5

28) chain B
residue 354
type MOD_RES
sequence T
description Phosphothreonine; by MELK => ECO:0000269|PubMed:22544756
source Swiss-Prot : SWS_FT_FI6


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